Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_F24
(714 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 (DA... 32 2.2
sp|Q87ZS5|FTSK_PSESM DNA translocase ftsK 31 3.7
sp|Q8WZ92|OR5P2_HUMAN Olfactory receptor 5P2 (Olfactory rec... 30 4.9
sp|P60599|HIS5_GEOSL Imidazole glycerol phosphate synthase ... 30 4.9
sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 (DA... 30 4.9
sp|P79457|UTY_MOUSE Ubiquitously transcribed Y chromosome t... 30 8.4
sp|Q8VG03|OL482_MOUSE Olfactory receptor 482 (Olfactory rec... 30 8.4
sp|Q9Z3U1|FTSK_PSEU2 DNA translocase ftsK 30 8.4
>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 (DAP kinase 1)
Length = 1442
Score = 31.6 bits (70), Expect = 2.2
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Frame = +2
Query: 53 IPRLENAIHYDGIWCGQHVFVTAVTAFLLYSVQHLTPAYVDVLHRCALHLGRWRREEGRS 232
IP L W + V + V+HLTP + H+ ++L RW ++
Sbjct: 1103 IPALIKTDSLQRSWADEEDEVMVYGGVRIVPVEHLTPFPCGIFHKVQVNLCRWIHQQSAE 1162
Query: 233 ANVPYNAW-SQLQIFPQGT-----LVKHVKGL 310
+ W S +I +G LV H +G+
Sbjct: 1163 GDADIRLWVSGCRIANRGAELLVLLVNHGQGI 1194
>sp|Q87ZS5|FTSK_PSESM DNA translocase ftsK
Length = 801
Score = 30.8 bits (68), Expect = 3.7
Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 395 RLINVMCSLVTMILVFQYALLI-QNYEWYKLISVGSMMFFNVFSLYKILRNRFLLGRCYK 571
R +N+ S + I +F + L + + W+K++ V + ++F L++ NR+ R +
Sbjct: 159 RALNIQGSTLLFIALFLFGLTVFTDLSWFKVMDVTGKITLDLFELFQGAANRWWTARAER 218
Query: 572 EESLS 586
++ ++
Sbjct: 219 KQMVA 223
>sp|Q8WZ92|OR5P2_HUMAN Olfactory receptor 5P2 (Olfactory receptor-like protein JCG3)
Length = 322
Score = 30.4 bits (67), Expect = 4.9
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = +2
Query: 245 YNAWSQLQIFPQGTLVKHVKGLFRAVG----IYNSAEPGNNMHNRFFCFFYPSLRLINVM 412
Y+ Q+ Q LV ++ G AV Y G N N FFC F P L L
Sbjct: 128 YSTKMSTQVSVQLLLVVYIAGFLIAVSYTTSFYFLLFCGPNQVNHFFCDFAPLLELSCSD 187
Query: 413 CSLVTMILVFQYALLI 460
S+ T++L F +I
Sbjct: 188 ISVSTVVLSFSSGSII 203
>sp|P60599|HIS5_GEOSL Imidazole glycerol phosphate synthase subunit hisH (IGP synthase
glutamine amidotransferase subunit) (IGP synthase
subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit
hisH)
Length = 209
Score = 30.4 bits (67), Expect = 4.9
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +2
Query: 86 GIWCGQHVFVTAVTAFLLYSVQHLTPAYVDVLHRCALHLGRWRREEGRSANVPYNAWSQL 265
GI G + +T F LY ++ P +V L RE G VP+ W+QL
Sbjct: 79 GICVGMQLLLTDSVEFGLYQGLNVIPGHV-------LRFPEGMREGGEELKVPHMGWNQL 131
Query: 266 QI 271
I
Sbjct: 132 SI 133
>sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 (DAP kinase 1)
Length = 1432
Score = 30.4 bits (67), Expect = 4.9
Identities = 14/68 (20%), Positives = 26/68 (38%)
Frame = +2
Query: 53 IPRLENAIHYDGIWCGQHVFVTAVTAFLLYSVQHLTPAYVDVLHRCALHLGRWRREEGRS 232
+P L + W + V + V+HLTP + H+ ++L RW ++
Sbjct: 1105 VPALIKTDNLHRSWADEEDEVMVYGGVRIVPVEHLTPFPCGIFHKVQVNLCRWIHQQSTE 1164
Query: 233 ANVPYNAW 256
+ W
Sbjct: 1165 GDADIRLW 1172
>sp|P79457|UTY_MOUSE Ubiquitously transcribed Y chromosome tetratricopeptide repeat
protein (Ubiquitously transcribed TPR protein ON the Y
chromosome) (Male-specific histocompatibility antigen
H-YDB)
Length = 1212
Score = 29.6 bits (65), Expect = 8.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 431 ILVFQYALLIQNYEWYKLISVGSMM 505
+ FQY L ++ YEW KL SV S++
Sbjct: 1056 LTAFQYKLAVERYEWNKLQSVKSVV 1080
>sp|Q8VG03|OL482_MOUSE Olfactory receptor 482 (Olfactory receptor 204-14)
Length = 323
Score = 29.6 bits (65), Expect = 8.4
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Frame = +2
Query: 311 FRAVGIYNSAEPGNNMHNRFFCFFYPSLRLINVMCS--------------LVTMILVFQY 448
F V I+N G N N FFC F P LI + CS L+TMI VF
Sbjct: 161 FVTVSIFNLLFCGPNKINHFFCDFDP---LIELSCSDVSVPVAVTSCSAGLITMITVFVI 217
Query: 449 AL 454
A+
Sbjct: 218 AV 219
>sp|Q9Z3U1|FTSK_PSEU2 DNA translocase ftsK
Length = 801
Score = 29.6 bits (65), Expect = 8.4
Identities = 13/65 (20%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 395 RLINVMCSLVTMILVFQYALLI-QNYEWYKLISVGSMMFFNVFSLYKILRNRFLLGRCYK 571
+ +N+ S + I +F + L + + W+K++ V + ++F L++ NR+ R +
Sbjct: 159 KALNIQGSTLLFIALFLFGLTVFTDLSWFKVMDVTGKITLDLFELFQGAANRWWTARAER 218
Query: 572 EESLS 586
++ ++
Sbjct: 219 KQMVA 223
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,237,848
Number of Sequences: 369166
Number of extensions: 1848891
Number of successful extensions: 4248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4247
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)