Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_F21
(463 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20470|RRPL_BUNYW RNA-directed RNA polymerase (L protein) 29 5.8
sp|O50163|METK_BORBU S-adenosylmethionine synthetase (Methi... 28 7.6
>sp|P20470|RRPL_BUNYW RNA-directed RNA polymerase (L protein)
Length = 2238
Score = 28.9 bits (63), Expect = 5.8
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 182 STKSERYCDQNYVLMINPNF--DPPVSIFAENCECRS-IYKMQTFKQYKVVRVFRKSYIL 352
S KS D+ + L NP F D ++ ++C R+ I K+ +K Y V+VF + Y L
Sbjct: 861 SKKSTEKFDKKFRLS-NPLFLEDEEANLEVQHCNYRALIQKIPNYKDYISVKVFDRLYEL 919
Query: 353 MK 358
+K
Sbjct: 920 LK 921
>sp|O50163|METK_BORBU S-adenosylmethionine synthetase (Methionine adenosyltransferase)
(AdoMet synthetase) (MAT)
Length = 392
Score = 28.5 bits (62), Expect = 7.6
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 77 PEIIRNINSIIKAHPAQLISPKLILQTRVPQNISLSTKSERYCDQNYVLMINPN 238
P I+NI + HP IS KLI QT + + I + + + D+N INP+
Sbjct: 186 PVKIKNIIVSHQHHPN--ISQKLIQQTIIEEIIKPTVQDKSMLDENTAYCINPS 237
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,998,336
Number of Sequences: 369166
Number of extensions: 733222
Number of successful extensions: 1674
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)