Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_F20
(541 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 307 9e-84
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 307 9e-84
sp|P02553|TBA_LYTPI Tubulin alpha chain 307 9e-84
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 306 2e-83
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 306 2e-83
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 305 4e-83
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 305 4e-83
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 305 5e-83
sp|P52273|TBA_BOMMO Tubulin alpha chain 305 5e-83
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 305 6e-83
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 307 bits (787), Expect = 9e-84
Identities = 144/146 (98%), Positives = 146/146 (100%)
Frame = +3
Query: 3 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVG 182
CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 183 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 362
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 363 EGEFSEAREDLAALEKDYEEVGIDSV 440
EGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 307 bits (787), Expect = 9e-84
Identities = 144/146 (98%), Positives = 146/146 (100%)
Frame = +3
Query: 3 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVG 182
CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 183 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 362
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 363 EGEFSEAREDLAALEKDYEEVGIDSV 440
EGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P02553|TBA_LYTPI Tubulin alpha chain
Length = 161
Score = 307 bits (787), Expect = 9e-84
Identities = 144/146 (98%), Positives = 146/146 (100%)
Frame = +3
Query: 3 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVG 182
CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVG
Sbjct: 5 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 64
Query: 183 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 362
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 65 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 124
Query: 363 EGEFSEAREDLAALEKDYEEVGIDSV 440
EGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 125 EGEFSEAREDLAALEKDYEEVGVDSV 150
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 306 bits (784), Expect = 2e-83
Identities = 143/146 (97%), Positives = 146/146 (100%)
Frame = +3
Query: 3 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVG 182
CFEPANQMVKCDPRHGKYM+CCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 183 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 362
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 363 EGEFSEAREDLAALEKDYEEVGIDSV 440
EGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 306 bits (784), Expect = 2e-83
Identities = 143/146 (97%), Positives = 146/146 (100%)
Frame = +3
Query: 3 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVG 182
CFEPANQ+VKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVG
Sbjct: 295 CFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 183 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 362
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 363 EGEFSEAREDLAALEKDYEEVGIDSV 440
EGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 305 bits (782), Expect = 4e-83
Identities = 142/146 (97%), Positives = 146/146 (100%)
Frame = +3
Query: 3 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVG 182
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 183 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 362
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 363 EGEFSEAREDLAALEKDYEEVGIDSV 440
EGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 305 bits (782), Expect = 4e-83
Identities = 142/146 (97%), Positives = 146/146 (100%)
Frame = +3
Query: 3 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVG 182
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVG
Sbjct: 256 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 315
Query: 183 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 362
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 316 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 375
Query: 363 EGEFSEAREDLAALEKDYEEVGIDSV 440
EGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 376 EGEFSEAREDMAALEKDYEEVGVDSV 401
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 305 bits (781), Expect = 5e-83
Identities = 143/145 (98%), Positives = 145/145 (100%)
Frame = +3
Query: 3 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVG 182
CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 183 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 362
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 363 EGEFSEAREDLAALEKDYEEVGIDS 437
EGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGMDS 439
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 305 bits (781), Expect = 5e-83
Identities = 143/145 (98%), Positives = 145/145 (100%)
Frame = +3
Query: 3 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVG 182
CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 183 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 362
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 363 EGEFSEAREDLAALEKDYEEVGIDS 437
EGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGMDS 439
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 305 bits (780), Expect = 6e-83
Identities = 142/145 (97%), Positives = 145/145 (100%)
Frame = +3
Query: 3 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVG 182
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 183 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 362
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 363 EGEFSEAREDLAALEKDYEEVGIDS 437
EGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGVDS 439
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,364,383
Number of Sequences: 369166
Number of extensions: 1056978
Number of successful extensions: 3260
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3060
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)