Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_F09-2
(514 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O08989|RASM_MOUSE Ras-related protein M-Ras (Ras-related... 111 9e-25
sp|P97538|RASM_RAT Ras-related protein M-Ras (Ras-related p... 111 9e-25
sp|O14807|RASM_HUMAN Ras-related protein M-Ras (Ras-related... 110 1e-24
sp|P62070|RRAS2_HUMAN Ras-related protein R-Ras2 (Ras-like ... 100 2e-21
sp|P22126|RAS1_NEUCR Ras-1 protein 99 8e-21
sp|P38976|RAS2_HYDMA Ras-like protein RAS2 98 1e-20
sp|P08647|RAS_SCHPO Ras-like protein 1 96 4e-20
sp|P01119|RAS1_YEAST Ras-like protein 1 96 4e-20
sp|P87018|RAS_BOTCI Ras-like protein 96 5e-20
sp|Q9UQX7|RAS1_CANAL Ras-like protein 1 (Ras homolog type B) 96 5e-20
>sp|O08989|RASM_MOUSE Ras-related protein M-Ras (Ras-related protein R-Ras3) (Muscle and
microspikes Ras) (X-Ras)
Length = 208
Score = 111 bits (278), Expect = 9e-25
Identities = 52/101 (51%), Positives = 73/101 (72%)
Frame = +1
Query: 211 ISVLDTAGQDSFSAMRQQYMRKGDAFLIMFSITDRNSFQMVRHLYKDILRTKDKESFPVL 390
+ VLDTAGQ+ FSAMR+QYMR GD FLI++S+TD+ SF+ V ++ ILR KD+ESFP++
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 122
Query: 391 IIGNKVDLXXXXXXXXXXXXXLASELNVHYMETSAKPPPIN 513
++ NKVDL +A++ N+ Y+ETSAK PP+N
Sbjct: 123 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN 163
Score = 72.8 bits (177), Expect = 5e-13
Identities = 30/50 (60%), Positives = 40/50 (80%)
Frame = +3
Query: 18 YVIVIIGDGAVGKTALTIQYFQRTFVEDYDPTIEDTYIQSKEFDGEWCDL 167
Y +V++GDG VGK+ALTIQ+FQ+ FV DYDPTIED+Y++ E D +W L
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAIL 63
>sp|P97538|RASM_RAT Ras-related protein M-Ras (Ras-related protein R-Ras3)
Length = 208
Score = 111 bits (278), Expect = 9e-25
Identities = 52/101 (51%), Positives = 73/101 (72%)
Frame = +1
Query: 211 ISVLDTAGQDSFSAMRQQYMRKGDAFLIMFSITDRNSFQMVRHLYKDILRTKDKESFPVL 390
+ VLDTAGQ+ FSAMR+QYMR GD FLI++S+TD+ SF+ V ++ ILR KD+ESFP++
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 122
Query: 391 IIGNKVDLXXXXXXXXXXXXXLASELNVHYMETSAKPPPIN 513
++ NKVDL +A++ N+ Y+ETSAK PP+N
Sbjct: 123 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN 163
Score = 72.8 bits (177), Expect = 5e-13
Identities = 30/50 (60%), Positives = 40/50 (80%)
Frame = +3
Query: 18 YVIVIIGDGAVGKTALTIQYFQRTFVEDYDPTIEDTYIQSKEFDGEWCDL 167
Y +V++GDG VGK+ALTIQ+FQ+ FV DYDPTIED+Y++ E D +W L
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAIL 63
>sp|O14807|RASM_HUMAN Ras-related protein M-Ras (Ras-related protein R-Ras3)
Length = 208
Score = 110 bits (276), Expect = 1e-24
Identities = 52/101 (51%), Positives = 73/101 (72%)
Frame = +1
Query: 211 ISVLDTAGQDSFSAMRQQYMRKGDAFLIMFSITDRNSFQMVRHLYKDILRTKDKESFPVL 390
+ VLDTAGQ+ FSAMR+QYMR GD FLI++S+TD+ SF+ V ++ ILR KD+ESFP++
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 122
Query: 391 IIGNKVDLXXXXXXXXXXXXXLASELNVHYMETSAKPPPIN 513
++ NKVDL +A++ N+ Y+ETSAK PP+N
Sbjct: 123 LVANKVDLMHLRKITREQGKEMATKHNIPYIETSAKDPPLN 163
Score = 72.8 bits (177), Expect = 5e-13
Identities = 30/50 (60%), Positives = 40/50 (80%)
Frame = +3
Query: 18 YVIVIIGDGAVGKTALTIQYFQRTFVEDYDPTIEDTYIQSKEFDGEWCDL 167
Y +V++GDG VGK+ALTIQ+FQ+ FV DYDPTIED+Y++ E D +W L
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAIL 63
>sp|P62070|RRAS2_HUMAN Ras-related protein R-Ras2 (Ras-like protein TC21) (Teratocarcinoma
oncogene)
sp|P62071|RRAS2_MOUSE Ras-related protein R-Ras2
Length = 204
Score = 100 bits (250), Expect = 2e-21
Identities = 47/96 (48%), Positives = 64/96 (66%)
Frame = +1
Query: 211 ISVLDTAGQDSFSAMRQQYMRKGDAFLIMFSITDRNSFQMVRHLYKDILRTKDKESFPVL 390
+ +LDTAGQ+ F AMR+QYMR G+ FL++FS+TDR SF+ + + ILR KD++ FP++
Sbjct: 64 LDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMI 123
Query: 391 IIGNKVDLXXXXXXXXXXXXXLASELNVHYMETSAK 498
+IGNK DL LA +L V YME SAK
Sbjct: 124 LIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAK 159
Score = 58.9 bits (141), Expect = 7e-09
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = +3
Query: 12 QKYVIVIIGDGAVGKTALTIQYFQRTFVEDYDPTIEDTYIQSKEFD 149
+KY +V++G G VGK+ALTIQ+ Q FV DYDPTIED+Y + D
Sbjct: 13 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVID 58
>sp|P22126|RAS1_NEUCR Ras-1 protein
Length = 213
Score = 98.6 bits (244), Expect = 8e-21
Identities = 46/96 (47%), Positives = 65/96 (67%)
Frame = +1
Query: 211 ISVLDTAGQDSFSAMRQQYMRKGDAFLIMFSITDRNSFQMVRHLYKDILRTKDKESFPVL 390
+ +LDTAGQ+ +SAMR+QYMR G+ FL++F+I R SF+ +R + ILR KD++SFP++
Sbjct: 58 LDILDTAGQEEYSAMREQYMRTGEGFLLVFAINSRESFEEIRIYQQQILRVKDRDSFPMI 117
Query: 391 IIGNKVDLXXXXXXXXXXXXXLASELNVHYMETSAK 498
I+GNK DL LA+E Y+ETSAK
Sbjct: 118 IVGNKYDLRGERVVSEQEGQALAAEFGTKYIETSAK 153
Score = 54.7 bits (130), Expect = 1e-07
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +3
Query: 3 KSYQKYVIVIIGDGAVGKTALTIQYFQRTFVEDYDPTIEDTYIQSKEFDGEWCDLTGLVD 182
K ++Y +V++G G VGK+ LTIQ Q F+++YDPTIED+Y + D E L+D
Sbjct: 4 KFTREYKLVVVGGGGVGKSCLTIQLIQGHFLDEYDPTIEDSYRKQCTIDNE----VALLD 59
Query: 183 ML 188
+L
Sbjct: 60 IL 61
>sp|P38976|RAS2_HYDMA Ras-like protein RAS2
Length = 192
Score = 97.8 bits (242), Expect = 1e-20
Identities = 46/99 (46%), Positives = 65/99 (65%)
Frame = +1
Query: 202 VINISVLDTAGQDSFSAMRQQYMRKGDAFLIMFSITDRNSFQMVRHLYKDILRTKDKESF 381
V ++ +LDTAGQ+ FSAMR +YMR G+ FL++FS+TDR+SF + + ILR KD E F
Sbjct: 55 VAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQILRVKDIEEF 114
Query: 382 PVLIIGNKVDLXXXXXXXXXXXXXLASELNVHYMETSAK 498
P++++GNK DL L +L V Y+E+SAK
Sbjct: 115 PMILVGNKSDLENERTVSTAEAQELGRKLKVSYLESSAK 153
Score = 58.2 bits (139), Expect = 1e-08
Identities = 24/39 (61%), Positives = 33/39 (84%)
Frame = +3
Query: 12 QKYVIVIIGDGAVGKTALTIQYFQRTFVEDYDPTIEDTY 128
++Y +V++G G VGK+ALTIQ+ Q FV+DYDPTIED+Y
Sbjct: 7 RQYKLVVVGGGGVGKSALTIQFIQSHFVQDYDPTIEDSY 45
>sp|P08647|RAS_SCHPO Ras-like protein 1
Length = 219
Score = 96.3 bits (238), Expect = 4e-20
Identities = 45/96 (46%), Positives = 65/96 (67%)
Frame = +1
Query: 211 ISVLDTAGQDSFSAMRQQYMRKGDAFLIMFSITDRNSFQMVRHLYKDILRTKDKESFPVL 390
+ VLDTAGQ+ +SAMR+QYMR G+ FL++++IT R+SF + Y+ ILR KDK++FPV+
Sbjct: 58 LDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVV 117
Query: 391 IIGNKVDLXXXXXXXXXXXXXLASELNVHYMETSAK 498
++ NK DL LA ++ Y+ETSAK
Sbjct: 118 LVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAK 153
Score = 64.3 bits (155), Expect = 2e-10
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = +3
Query: 12 QKYVIVIIGDGAVGKTALTIQYFQRTFVEDYDPTIEDTYIQSKEFDGE 155
++Y +V++GDG VGK+ALTIQ Q FV++YDPTIED+Y + E DGE
Sbjct: 7 REYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGE 54
>sp|P01119|RAS1_YEAST Ras-like protein 1
Length = 309
Score = 96.3 bits (238), Expect = 4e-20
Identities = 44/96 (45%), Positives = 64/96 (66%)
Frame = +1
Query: 211 ISVLDTAGQDSFSAMRQQYMRKGDAFLIMFSITDRNSFQMVRHLYKDILRTKDKESFPVL 390
+ +LDTAGQ+ +SAMR+QYMR G+ FL+++S+T RNSF + Y+ I R KD + PV+
Sbjct: 60 LDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQRVKDSDYIPVV 119
Query: 391 IIGNKVDLXXXXXXXXXXXXXLASELNVHYMETSAK 498
++GNK+DL LA +LN ++ETSAK
Sbjct: 120 VVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAK 155
Score = 58.5 bits (140), Expect = 9e-09
Identities = 28/59 (47%), Positives = 41/59 (69%)
Frame = +3
Query: 12 QKYVIVIIGDGAVGKTALTIQYFQRTFVEDYDPTIEDTYIQSKEFDGEWCDLTGLVDML 188
++Y IV++G G VGK+ALTIQ+ Q FV++YDPTIED+Y + D D ++D+L
Sbjct: 9 REYKIVVVGGGGVGKSALTIQFIQSYFVDEYDPTIEDSYRKQVVID----DKVSILDIL 63
>sp|P87018|RAS_BOTCI Ras-like protein
Length = 212
Score = 95.9 bits (237), Expect = 5e-20
Identities = 46/101 (45%), Positives = 65/101 (64%)
Frame = +1
Query: 196 ELVINISVLDTAGQDSFSAMRQQYMRKGDAFLIMFSITDRNSFQMVRHLYKDILRTKDKE 375
E V + VLDTAGQ+ +SAMR+QYMR G+ FL+++SIT R SF+ + + ILR KDK+
Sbjct: 53 EEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKD 112
Query: 376 SFPVLIIGNKVDLXXXXXXXXXXXXXLASELNVHYMETSAK 498
FP++++GNK DL LA + ++ETSAK
Sbjct: 113 YFPIIVVGNKCDLEGERQVSKQEGQQLADDFGCKFIETSAK 153
Score = 55.5 bits (132), Expect = 7e-08
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +3
Query: 3 KSYQKYVIVIIGDGAVGKTALTIQYFQRTFVEDYDPTIEDTYIQSKEFDGEWCDLTGLVD 182
K ++Y +V++G G VGK+ LTIQ Q FV++YDPTIED+Y + D E L+D
Sbjct: 4 KFLREYKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCVIDEE----VALLD 59
Query: 183 ML 188
+L
Sbjct: 60 VL 61
>sp|Q9UQX7|RAS1_CANAL Ras-like protein 1 (Ras homolog type B)
Length = 290
Score = 95.9 bits (237), Expect = 5e-20
Identities = 46/96 (47%), Positives = 62/96 (64%)
Frame = +1
Query: 211 ISVLDTAGQDSFSAMRQQYMRKGDAFLIMFSITDRNSFQMVRHLYKDILRTKDKESFPVL 390
+ VLDTAGQ+ +SAMR+QYMR G+ FL+++SI NSFQ + Y ILR KD ++ PVL
Sbjct: 54 LDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVL 113
Query: 391 IIGNKVDLXXXXXXXXXXXXXLASELNVHYMETSAK 498
++GNK DL LA+ N ++ETSAK
Sbjct: 114 VVGNKCDLEMERQVSYEDGLALANSFNCPFLETSAK 149
Score = 55.5 bits (132), Expect = 7e-08
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +3
Query: 12 QKYVIVIIGDGAVGKTALTIQYFQRTFVEDYDPTIEDTYIQSKEFDGE 155
++Y +V++G G VGK+ALTIQ Q FV++YDPTIED+Y + D +
Sbjct: 3 REYKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKQCTIDDQ 50
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,849,120
Number of Sequences: 369166
Number of extensions: 985459
Number of successful extensions: 3752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3530
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)