Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_E24
(250 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9PK57|PT1_CHLMU Phosphoenolpyruvate-protein phosphotran... 28 8.5
sp|P32866|GPRK2_DROME G protein-coupled receptor kinase 2 28 8.5
>sp|Q9PK57|PT1_CHLMU Phosphoenolpyruvate-protein phosphotransferase (Phosphotransferase
system, enzyme I)
Length = 567
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 8 LSHLSDDHKVANKMMLNLWLEGKSSLTPSVANLVAAFEEI 127
+ + D H ++N+++ +L + KSSL S NL+ EE+
Sbjct: 140 VDRIQDIHDISNRVIGHLCCQHKSSLGESDQNLIVFSEEL 179
>sp|P32866|GPRK2_DROME G protein-coupled receptor kinase 2
Length = 714
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -3
Query: 110 QLDWRRMESGLIFPP 66
QL+WRR+E+G++ PP
Sbjct: 578 QLNWRRLEAGMLEPP 592
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,582,725
Number of Sequences: 369166
Number of extensions: 383483
Number of successful extensions: 918
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 68,354,980
effective HSP length: 53
effective length of database: 58,564,025
effective search space used: 1698356725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)