Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_E18
(313 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9KSN0|TPMT_VIBCH Thiopurine S-methyltransferase (Thiopu... 30 1.3
sp|Q72QK5|SYD_LEPIC Aspartyl-tRNA synthetase (Aspartate--tR... 30 1.3
sp|Q8F5K1|SYD_LEPIN Aspartyl-tRNA synthetase (Aspartate--tR... 30 1.3
sp|P34520|YM44_CAEEL Hypothetical protein K11H3.4 in chromo... 29 2.9
sp|Q5WUW3|KUP2_LEGPL Probable potassium transport system pr... 29 2.9
sp|Q5X3H2|KUP2_LEGPA Probable potassium transport system pr... 29 2.9
sp|O86262|TPMT_PSESJ Thiopurine S-methyltransferase (Thiopu... 29 2.9
sp|Q04052|ARO80_YEAST Transcriptional activator ARO80 29 2.9
sp|Q5ZTN5|KUP2_LEGPH Probable potassium transport system pr... 29 3.8
sp|Q9Z0T0|TPMT_RAT Thiopurine S-methyltransferase (Thiopuri... 28 6.6
>sp|Q9KSN0|TPMT_VIBCH Thiopurine S-methyltransferase (Thiopurine methyltransferase)
Length = 218
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 2 DYIKLLYNYLNEEGHIFFETLQYDQNIFGGPPFSVSEDEFDAL 130
+Y + + L G I ++ Y Q GPPFSV E E L
Sbjct: 135 EYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSVPEAEIRTL 177
>sp|Q72QK5|SYD_LEPIC Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 601
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 77 NIFGGPPFSVSEDEFDALMKINHLKYETVHTGKYERKIEGVEMNEFINIVSKY 235
N+ PPFS+ DEFD + + LKY + + E K ++ +EFI + Y
Sbjct: 113 NVAKTPPFSL--DEFDEVSEELKLKYRYLDFRREELKNRMIKRHEFIFAIRNY 163
>sp|Q8F5K1|SYD_LEPIN Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 601
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 77 NIFGGPPFSVSEDEFDALMKINHLKYETVHTGKYERKIEGVEMNEFINIVSKY 235
N+ PPFS+ DEFD + + LKY + + E K ++ +EFI + Y
Sbjct: 113 NVAKTPPFSL--DEFDEVSEELKLKYRYLDFRREELKNRMIKRHEFIFAIRNY 163
>sp|P34520|YM44_CAEEL Hypothetical protein K11H3.4 in chromosome III
Length = 717
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 131 MKINHLKYETVHTGKYER 184
MKINHL+Y+ VH G + R
Sbjct: 280 MKINHLRYQDVHVGTWVR 297
>sp|Q5WUW3|KUP2_LEGPL Probable potassium transport system protein kup 2
Length = 624
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +2
Query: 47 IFFETLQYDQNIFGGPPFSVSEDEFDALMKINHLKYETVHTGKYERKIEGVEMNEFINIV 226
IFFE + + P+ ED+F+ + K +H G E E++E V
Sbjct: 497 IFFENMVFVSIKIENKPYIPIEDKFELIKKAEGFYLIFIHYGFTENINLPNELDEMFKRV 556
Query: 227 SKY*IIVNNKSLFFLNFIW 283
I+ NK ++F+ ++
Sbjct: 557 YLPFDIIKNKLIYFIEIVF 575
>sp|Q5X3H2|KUP2_LEGPA Probable potassium transport system protein kup 2
Length = 625
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +2
Query: 47 IFFETLQYDQNIFGGPPFSVSEDEFDALMKINHLKYETVHTGKYERKIEGVEMNEFINIV 226
IFFE + + P+ ED+F+ + K +H G E E++E V
Sbjct: 498 IFFENMVFVSIKIENKPYIPIEDKFELIKKAEGFYLIFIHYGFTENINLPNELDEMFKRV 557
Query: 227 SKY*IIVNNKSLFFLNFIW 283
I+ NK ++F+ ++
Sbjct: 558 YLPFDIIKNKLIYFIEIVF 576
>sp|O86262|TPMT_PSESJ Thiopurine S-methyltransferase (Thiopurine methyltransferase)
(Tellurite-resistance determinant) (TEL-R determinant)
Length = 218
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 59 TLQYDQNIFGGPPFSVSEDEFDALMKIN 142
TL+YDQ + GPPFSV + +M N
Sbjct: 155 TLEYDQALLEGPPFSVPQTWLHRVMSGN 182
>sp|Q04052|ARO80_YEAST Transcriptional activator ARO80
Length = 950
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Frame = +2
Query: 26 YLNEEGHIFFETLQYDQNIFGG--PPF----SVSEDEFDALMKINHLKYETVHTGKYERK 187
+LN+E +++ + D N+ PPF S ++ +++I + YET++ K +RK
Sbjct: 511 FLNDEYVLYYSNKKDDTNLAQNHIPPFPLRFSFAQRAKIEIIRILSIAYETIYCEKNKRK 570
Query: 188 IEGVEMNEFINIVSKY 235
+ + ++++S +
Sbjct: 571 LATTDQRHNLSVLSVF 586
>sp|Q5ZTN5|KUP2_LEGPH Probable potassium transport system protein kup 2
Length = 625
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +2
Query: 47 IFFETLQYDQNIFGGPPFSVSEDEFDALMKINHLKYETVHTGKYERKIEGVEMNEFINIV 226
IFFE + + P+ ED+F+ + K +H G E E++E V
Sbjct: 498 IFFENMIFVSIKIENKPYIPIEDKFELIKKAEGFYLIFIHYGFTENINLPNELDEMFKRV 557
Query: 227 SKY*IIVNNKSLFFLNFIW 283
I+ NK ++F+ ++
Sbjct: 558 YLPFEIIKNKLIYFIEIVF 576
>sp|Q9Z0T0|TPMT_RAT Thiopurine S-methyltransferase (Thiopurine methyltransferase)
Length = 240
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +2
Query: 5 YIKLLYNYLNEEGHIFFETLQYDQNIFGGPPFSVSEDEFDALM--KINHLKYETVHTGKY 178
Y ++ + L + H L YD GPPF V + E L K N E V +
Sbjct: 161 YADIILSLLRKGYHYLLVVLSYDPTKHTGPPFYVPDAELKKLFGTKCNMQCLEEVDALEE 220
Query: 179 ERKIEGVE 202
K GV+
Sbjct: 221 RHKTWGVD 228
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,670,475
Number of Sequences: 369166
Number of extensions: 668141
Number of successful extensions: 1767
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)