Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_E17
(358 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 44 1e-04
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 44 1e-04
sp|P25182|VMAT_SV41 MATRIX PROTEIN 29 3.8
sp|Q9UIU6|SIX4_HUMAN Homeobox protein SIX4 (Sine oculis hom... 28 4.9
sp|Q90XB6|SULF1_COTCO Extracellular sulfatase Sulf-1 precur... 28 4.9
sp|P16200|VNB_INBMF NB glycoprotein 28 4.9
sp|Q8IWU6|SULF1_HUMAN Extracellular sulfatase Sulf-1 precur... 28 6.5
sp|P06817|VNB_INBLE NB glycoprotein 28 6.5
sp|Q8K007|SULF1_MOUSE Extracellular sulfatase Sulf-1 precur... 28 6.5
sp|Q8VI60|SULF1_RAT Extracellular sulfatase Sulf-1 precurso... 28 6.5
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 43.9 bits (102), Expect = 1e-04
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +3
Query: 87 CVPGSNLLLRTKHRGKNNIRGTIIEDCCKTYWCYWCTICQLKRDMD 224
C+ G+++ +RT +R + I G+I +D T C CT+CQ+KRD++
Sbjct: 62 CLCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDIN 107
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 43.5 bits (101), Expect = 1e-04
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +3
Query: 87 CVPGSNLLLRTKHRGKNNIRGTIIEDCCKTYWCYWCTICQLKRDMD 224
C+ G+ + +RT +R + I G+I +D T +C C++CQLKRD++
Sbjct: 59 CLCGTTVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104
>sp|P25182|VMAT_SV41 MATRIX PROTEIN
Length = 382
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 45 YLYNVHNEFVFTPVCVPGSNLL--LRTKHRGKNNIRGTIIEDCCKTYWCYWCTICQLKR 215
++Y++H E +F +C P S LL T G+ C + W + C I + K+
Sbjct: 197 FVYSIHMEIIFRLLCKPDSPLLKTYATDPEGRG---------CLASVWIHVCNILKNKK 246
>sp|Q9UIU6|SIX4_HUMAN Homeobox protein SIX4 (Sine oculis homeobox homolog 4)
Length = 760
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -3
Query: 356 AIRTKTISSNIISDHISL*KILGKKSNKIFIF*LFQSS 243
A+ +SSNI+S+ IS+ ILG S + F + QSS
Sbjct: 369 ALNPPKMSSNIVSNGISMTDILGSTSQDVKEFKVLQSS 406
>sp|Q90XB6|SULF1_COTCO Extracellular sulfatase Sulf-1 precursor (QSulf1)
Length = 867
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 63 NEFVFTPVCVPGSNLLLRTKHRGKNNIRGTIIEDCCKTYW 182
N FV TP+C P + +L K+ +NI T E+C W
Sbjct: 79 NAFVTTPMCCPSRSSMLTGKYVHNHNIY-TNNENCSSPSW 117
>sp|P16200|VNB_INBMF NB glycoprotein
Length = 99
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 221 HVTF*LTNCTPITPIRFATIFYYCSSDVIFASMFG 117
+ TF TN PI+ IR + I C S ++ ++FG
Sbjct: 3 NATFNYTNVNPISHIRGSVIITICVSFIVILTVFG 37
>sp|Q8IWU6|SULF1_HUMAN Extracellular sulfatase Sulf-1 precursor (HSulf-1)
Length = 871
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 63 NEFVFTPVCVPGSNLLLRTKHRGKNNIRGTIIEDCCKTYW 182
N FV TP+C P + +L K+ +N+ T E+C W
Sbjct: 79 NAFVTTPMCCPSRSSMLTGKYVHNHNVY-TNNENCSSPSW 117
>sp|P06817|VNB_INBLE NB glycoprotein
Length = 100
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 221 HVTF*LTNCTPITPIRFATIFYYCSSDVIFASMFG 117
+ TF TN PIT IR + I C S ++ +FG
Sbjct: 3 NATFNCTNINPITHIRGSIIITICVSLIVILIVFG 37
>sp|Q8K007|SULF1_MOUSE Extracellular sulfatase Sulf-1 precursor (MSulf-1)
Length = 870
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 63 NEFVFTPVCVPGSNLLLRTKHRGKNNIRGTIIEDCCKTYW 182
N FV TP+C P + +L K+ +N+ T E+C W
Sbjct: 79 NAFVTTPMCCPSRSSMLTGKYVHNHNVY-TNNENCSSPSW 117
>sp|Q8VI60|SULF1_RAT Extracellular sulfatase Sulf-1 precursor (Sulfatase FP) (RSulfFP1)
Length = 870
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 63 NEFVFTPVCVPGSNLLLRTKHRGKNNIRGTIIEDCCKTYW 182
N FV TP+C P + +L K+ +N+ T E+C W
Sbjct: 79 NAFVTTPMCCPSRSSMLTGKYVHNHNVY-TNNENCSSPSW 117
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,658,501
Number of Sequences: 369166
Number of extensions: 601010
Number of successful extensions: 1215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)