Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_E09
(316 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y3C0|AD16_HUMAN Protein AD-016 37 0.014
sp|O01901|YIWC_CAEEL Hypothetical protein F59E12.10 in chro... 35 0.041
sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding m... 29 2.9
sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding mot... 29 2.9
sp|Q06433|GAL80_KLULA Galactose/lactose metabolism regulato... 29 3.8
sp|Q01427|VMAT_PI1HC Matrix protein 28 5.0
sp|P36355|VMAT_PI1HA Matrix protein 28 5.0
sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4... 28 6.5
sp|O69300|LON_CAMJE ATP-dependent protease La 28 8.5
sp|P23621|PHOR_PSEAE Phosphate regulon sensor protein phoR 28 8.5
>sp|Q9Y3C0|AD16_HUMAN Protein AD-016
Length = 194
Score = 37.0 bits (84), Expect = 0.014
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +1
Query: 31 DNVIEISKHPLYKKYFDMKKYGVPDPQIQLNMKTSGIDPNSVDLSD 168
+N++ ++K P Y +Y M + GVP I+ M + G+DP+ ++ D
Sbjct: 125 ENILTVAKDPRYARYLKMVQVGVPVMAIRNKMISEGLDPDLLERPD 170
>sp|O01901|YIWC_CAEEL Hypothetical protein F59E12.10 in chromosome II
Length = 189
Score = 35.4 bits (80), Expect = 0.041
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 46 ISKHPLYKKYFDMKKYGVPDPQIQLNMKTSGIDPNSVDLSD-PSK 177
I P Y KYF M K GV + + MK+ G+DP+ + D PS+
Sbjct: 122 IKDDPAYSKYFKMLKLGVLEAGVIQKMKSEGVDPSILKRGDEPSR 166
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding motif protein 10) (DXS8237E)
Length = 929
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 85 KKYGVPDPQIQLNMKTSGIDPNSVDLSDPSK 177
+KYG+P+P K GI SVD P++
Sbjct: 822 EKYGIPEPPEPKRRKYGGISTASVDFEQPTR 852
>sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding motif protein 10) (S1-1
protein)
Length = 852
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 85 KKYGVPDPQIQLNMKTSGIDPNSVDLSDPSK 177
+KYG+P+P K GI SVD P++
Sbjct: 745 EKYGIPEPPEPKRRKYGGISTASVDFEQPTR 775
>sp|Q06433|GAL80_KLULA Galactose/lactose metabolism regulatory protein GAL80
Length = 457
Score = 28.9 bits (63), Expect = 3.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 116 CICGSGTPYFFISKYFLYKGCLDISITLSIGGTTGW 9
C+ G +PY +K + +GC+ ++ I G GW
Sbjct: 150 CLQGRKSPYIVRAKELISEGCIGDINSIEISGNGGW 185
>sp|Q01427|VMAT_PI1HC Matrix protein
Length = 348
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Frame = -3
Query: 113 ICGSGTPYFFISKYF-----LYKGCLDISITL 33
ICGSG+ I+KY+ L K C+D+ IT+
Sbjct: 82 ICGSGSLPIGIAKYYGTDQELLKACIDLKITV 113
>sp|P36355|VMAT_PI1HA Matrix protein
Length = 348
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Frame = -3
Query: 113 ICGSGTPYFFISKYF-----LYKGCLDISITL 33
ICGSG+ I+KY+ L K C+D+ IT+
Sbjct: 82 ICGSGSLPIGIAKYYGTDQELLKACIDLKITV 113
>sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 (SCC2 homolog)
Length = 1583
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 122 FNCICGSGTPYFFISKYFLYKGCLDISITLSIGGT-TGWV 6
F C+C +G PY I + + +D S+ +IG T TGW+
Sbjct: 1452 FCCVCLAGIPYVSIEEPLMIISTVD-SVLATIGPTITGWM 1490
>sp|O69300|LON_CAMJE ATP-dependent protease La
Length = 791
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 40 IEISKHPLYKKYFDMKKYGVPDPQIQLNMKTSGIDPNSVDLSD 168
IE+S + +K+ MKKY +PD +K G+ N + + D
Sbjct: 497 IELSSYTPSEKFHIMKKYLIPD-----ELKKHGLKSNELSIDD 534
>sp|P23621|PHOR_PSEAE Phosphate regulon sensor protein phoR
Length = 443
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 25 PIDNVIEISKHPLYKKYFDMKKYGVP 102
P+ N+I +HP +K+YFD + Y P
Sbjct: 146 PVSNLI---RHPRFKEYFDQEDYREP 168
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,705,914
Number of Sequences: 369166
Number of extensions: 556573
Number of successful extensions: 1495
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)