Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_D21
(495 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q95168|ZO2_CANFA Tight junction protein ZO-2 (Zonula occ... 34 0.16
sp|O94680|PDAT_SCHPO Phospholipid:diacylglycerol acyltransf... 32 1.1
sp|P22465|ANX10_DROME Annexin X 31 1.8
sp|P44287|Y1671_HAEIN Hypothetical protein HI1671 30 4.1
sp|Q9VQ57|DERL1_DROME Derlin-1 (DER1-like protein 1) 30 4.1
sp|Q57251|Y1218_HAEIN Putative L-lactate permease 29 5.3
sp|P38738|YHC9_YEAST Hypothetical 77.8 kDa protein in GUT1-... 29 5.3
sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated act... 28 9.0
>sp|Q95168|ZO2_CANFA Tight junction protein ZO-2 (Zonula occludens 2 protein) (Zona
occludens 2 protein) (Tight junction protein 2)
Length = 1174
Score = 34.3 bits (77), Expect = 0.16
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = +2
Query: 32 YDNDYGMPRSSGLGMDSDYGMPRTVNPGFDSDYLMPRQNKPLFEPDFTNDIKPDIKRGFG 211
+D+DYG P GM +D G R + G+D Y R P E ++ +PD +
Sbjct: 202 HDDDYGRPGERSHGMSTDRGYDRGYDRGYDRGY--DRTYSP--EAEYGRRTQPDARHAGS 257
Query: 212 GMPEDSLLDNRMPPP 256
L +R P P
Sbjct: 258 RSRSREHLRSRSPSP 272
>sp|O94680|PDAT_SCHPO Phospholipid:diacylglycerol acyltransferase (PDAT) (Pombe LRO1
homolog 1)
Length = 623
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 149 KPLFEPDFTNDIKPDIKRGFGGMPEDSLLDNRMPPPWSNSITRSQMNAPYAPSIPIDMVH 328
K + + DF + + G ++ L +N MP W N + + + PYAP + I VH
Sbjct: 428 KNVTDDDFKVMLAKNYSHGLAWTEKEVLKNNEMPSKWINPL---ETSLPYAPDMKIYCVH 484
>sp|P22465|ANX10_DROME Annexin X
Length = 320
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +2
Query: 125 DYLMPRQN------KPLFEPDFTNDIKPDIKRGFGGMPEDSLLDNRMPP 253
D L+ R N K ++E +F D+ D+K GG ED ++ MPP
Sbjct: 40 DVLVGRSNQQRQTIKAVYEAEFERDLVDDLKDELGGKFEDVIVGLMMPP 88
>sp|P44287|Y1671_HAEIN Hypothetical protein HI1671
Length = 416
Score = 29.6 bits (65), Expect = 4.1
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = -1
Query: 378 CDSTILNSSVQKLNRKWWTISIGMLGAYGAFICDRVIELLQGGGMRLSSNESSGIPPNPR 199
C S + S KL W T+ G++ + A LL G+ L+ G
Sbjct: 244 CQSPLNTSDKLKLQATWATLIAGIIMLFPA-------NLLPISGIYLT-----GALSEDT 291
Query: 198 LISGLMSLVKSGS 160
LISG++S VKSGS
Sbjct: 292 LISGVISFVKSGS 304
>sp|Q9VQ57|DERL1_DROME Derlin-1 (DER1-like protein 1)
Length = 245
Score = 29.6 bits (65), Expect = 4.1
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Frame = +2
Query: 116 FDSDYLMPRQNKPLFE-PDFTNDIKPDIKRGFG--GMPEDSLLDNRMPP------PWSNS 268
F Y PL E P F + PD+ GFG G+P +S R PP PW
Sbjct: 184 FKFQYSQDLGGTPLLETPQFLKRLVPDVSGGFGGFGLPPES----RAPPRQATESPWGRG 239
Query: 269 IT 274
+T
Sbjct: 240 MT 241
>sp|Q57251|Y1218_HAEIN Putative L-lactate permease
Length = 532
Score = 29.3 bits (64), Expect = 5.3
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = -1
Query: 366 ILNSSVQKLNRKWWTISIGMLGAYGAFIC-DRVIELLQGGGMRLSSNESSGIPPNPRLIS 190
I+ + +++ WTI LGA G+F + L G ++LS+ E++GI + L+
Sbjct: 412 IIGRTFAEISGSNWTIFSSFLGAIGSFFSGSNTVSNLTFGSVQLSTAETTGI--SVALVL 469
Query: 189 GLMSLVKSGSNSGLFC 142
L S+ G+ + C
Sbjct: 470 ALQSV--GGAMGNMVC 483
>sp|P38738|YHC9_YEAST Hypothetical 77.8 kDa protein in GUT1-RIM1 intergenic region
Length = 679
Score = 29.3 bits (64), Expect = 5.3
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 194 IKRGFGGMPEDSLLDNRMPPPWSNSITRSQMNAPYAPSIP-IDMVHHFRFNFWTDEFNIV 370
++ +GG + DN +P P S+S +S++ P++ P + ++ F +EF ++
Sbjct: 516 LRNRYGGTQSKAQKDNTVPSPGSDSNDKSELKLPFSSIDPHMQLIFIFIAILQFNEFKLL 575
Query: 371 E 373
E
Sbjct: 576 E 576
>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 (60 kDa BRG-1/Brm
associated factor subunit C) (BRG1-associated factor
60C)
Length = 483
Score = 28.5 bits (62), Expect = 9.0
Identities = 17/68 (25%), Positives = 23/68 (33%)
Frame = +2
Query: 104 VNPGFDSDYLMPRQNKPLFEPDFTNDIKPDIKRGFGGMPEDSLLDNRMPPPWSNSITRSQ 283
V PG S MP Q P+ P P ++ G + PPP +
Sbjct: 26 VRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQG 85
Query: 284 MNAPYAPS 307
P AP+
Sbjct: 86 QPVPTAPA 93
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,280,939
Number of Sequences: 369166
Number of extensions: 1326257
Number of successful extensions: 3554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3553
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)