Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_D20
(578 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05193|DYN1_HUMAN Dynamin-1 38 0.021
sp|P39053|DYN1_MOUSE Dynamin-1 35 0.18
sp|P39052|DYN2_RAT Dynamin-2 33 0.39
sp|P21575|DYN1_RAT Dynamin-1 (D100) (Dynamin, brain) (B-dyn... 33 0.67
sp|P50570|DYN2_HUMAN Dynamin-2 32 1.5
sp|O43516|WASIP_HUMAN Wiskott-Aldrich syndrome protein inte... 31 2.5
sp|P36304|POLR_KYMVJ RNA replicase polyprotein 30 3.3
sp|P27619|DYN_DROME Dynamin (dDyn) (Shibire protein) 30 3.3
sp|Q9JMC1|PI5PA_RAT Phosphatidylinositol 4,5-bisphosphate 5... 30 4.3
sp|P39054|DYN2_MOUSE Dynamin-2 (Dynamin UDNM) 30 4.3
>sp|Q05193|DYN1_HUMAN Dynamin-1
Length = 864
Score = 37.7 bits (86), Expect = 0.021
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Frame = +3
Query: 6 TPVPPPVTNEWISADNSSVGQMXXXXXXXXXXXXXXXXXMK-----LSQGPPTR-----L 155
TP+PPPV + W+ + G+ + + GPP
Sbjct: 752 TPMPPPVDDSWLQVQSVPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPGPPPAGSALGG 811
Query: 156 APSVPKSPNIASNNLIPPLIPQRPSSGGKNTPNIPSRS 269
AP VP P + + PP PQ PS + P +PSRS
Sbjct: 812 APPVPSRPGASPDPFGPP--PQVPSRPNRAPPGVPSRS 847
>sp|P39053|DYN1_MOUSE Dynamin-1
Length = 867
Score = 34.7 bits (78), Expect = 0.18
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Frame = +3
Query: 6 TPVPPPVTNEWISADNSSVGQMXXXXXXXXXXXXXXXXXMK-----LSQGPPTR-----L 155
TP+PPPV + W+ + G+ + + GPP
Sbjct: 752 TPMPPPVDDSWLQVQSVPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPGPPPAGSALGG 811
Query: 156 APSVPKSPNIASNNLIPPLIPQRPSSGGKNTPNIPSRS*YEAN 284
AP VP P + + PP PQ PS + P +PS + N
Sbjct: 812 APPVPSRPGASPDPFGPP--PQVPSRPNRAPPGVPSLGAWRLN 852
>sp|P39052|DYN2_RAT Dynamin-2
Length = 870
Score = 33.5 bits (75), Expect = 0.39
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 17/104 (16%)
Frame = +3
Query: 6 TPVPPPVTNEWISADNSSVGQMXXXXXXXXXXXXXXXXXMKLSQGPP----------TRL 155
TPVPPPV + W+ +S + GPP +
Sbjct: 746 TPVPPPVDDTWLQNTSSHSPTPQRRPVSSVHPPGRPPAVRGPTPGPPLIPMPVGATSSFS 805
Query: 156 APSVPKSP---NIASNN---LIPPLIPQRPSSGGKN-TPNIPSR 266
AP +P P N+ +NN PP IP RP+ P +PSR
Sbjct: 806 APPIPSRPGPQNVFANNDPFSAPPQIPSRPARIPPGIPPGVPSR 849
>sp|P21575|DYN1_RAT Dynamin-1 (D100) (Dynamin, brain) (B-dynamin)
Length = 851
Score = 32.7 bits (73), Expect = 0.67
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Frame = +3
Query: 6 TPVPPPVTNEWISADNSSVGQMXXXXXXXXXXXXXXXXXMK-----LSQGPPTR-----L 155
TP+PPPV + W+ + G+ + + GPP
Sbjct: 752 TPMPPPVDDSWLQVQSVPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPGPPPAGSALGG 811
Query: 156 APSVPKSPNIASNNLIPPLIPQRPSSGGKNTPNIP 260
AP VP P + + PP PQ PS + P +P
Sbjct: 812 APPVPSRPGASPDPFGPP--PQVPSRPNRAPPGVP 844
>sp|P50570|DYN2_HUMAN Dynamin-2
Length = 870
Score = 31.6 bits (70), Expect = 1.5
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Frame = +3
Query: 6 TPVPPPVTNEWISADNSSVGQMXXXXXXXXXXXXXXXXXMKLSQGPP----------TRL 155
TPVPPPV + W+ + +S + GPP +
Sbjct: 746 TPVPPPVDDTWLQSASSHSPTPQRRPVSSIHPPGRPPAVRGPTPGPPLIPVPVGAAASFS 805
Query: 156 APSVPKSP---NIASNNLIPPLIPQRPSSGGKNTPNIP 260
AP +P P ++ +N+ + P PQ PS + P IP
Sbjct: 806 APPIPSRPGPQSVFANSDLFPAPPQIPSRPVRIPPGIP 843
>sp|O43516|WASIP_HUMAN Wiskott-Aldrich syndrome protein interacting protein (WASP
interacting protein) (PRPL-2 protein)
Length = 503
Score = 30.8 bits (68), Expect = 2.5
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 132 SQGPPTRLAPSVPKSPNI---ASNNLIPPLIPQRPSSGGKNTPNIPS 263
SQ PP PS P P + +S N P +PQR S +TP +PS
Sbjct: 304 SQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPS 350
Score = 30.4 bits (67), Expect = 3.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Frame = +3
Query: 141 PPTRLAPSVPKSPNIASNNLI--PPLIPQRP--------SSGGKNTPNIPSRS 269
PP P VP +P ++++ PP P RP SSG TP +P R+
Sbjct: 286 PPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRN 338
>sp|P36304|POLR_KYMVJ RNA replicase polyprotein
Length = 1874
Score = 30.4 bits (67), Expect = 3.3
Identities = 21/47 (44%), Positives = 24/47 (51%)
Frame = +3
Query: 129 LSQGPPTRLAPSVPKSPNIASNNLIPPLIPQRPSSGGKNTPNIPSRS 269
LSQGP T+ APS +P L PP +P S N PN PS S
Sbjct: 637 LSQGPATQ-APSAQPTPG--EPLLAPPTTELKPESSNPNNPN-PSSS 679
>sp|P27619|DYN_DROME Dynamin (dDyn) (Shibire protein)
Length = 877
Score = 30.4 bits (67), Expect = 3.3
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Frame = +3
Query: 6 TPVPPPVTNEWISA--DNSSVGQMXXXXXXXXXXXXXXXXXMKLSQGPPTRLAPSVPKSP 179
+P+PPPV N+W+ + DN + ++ GPP + + P
Sbjct: 743 SPLPPPVKNDWLPSGLDNPRLS-------------PPSPGGVRGKPGPPAQSSLGGRNPP 789
Query: 180 NIASNNLIPPLIPQRPSSGGKNTP 251
S P IP RP G P
Sbjct: 790 LPPSTGRPAPAIPNRPGGGAPPLP 813
>sp|Q9JMC1|PI5PA_RAT Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (Proline-rich
inositol polyphosphate 5-phosphatase)
Length = 1001
Score = 30.0 bits (66), Expect = 4.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 144 PTRLAPSVPKSPNIASNNLIPPLIPQRPSSGGKNTPNIPSRS 269
P L+P+ P I SN +PP +P+ P S ++ P+RS
Sbjct: 321 PGLLSPTF--RPGIPSNQTVPPPLPKPPRSPSRSPSRSPNRS 360
>sp|P39054|DYN2_MOUSE Dynamin-2 (Dynamin UDNM)
Length = 870
Score = 30.0 bits (66), Expect = 4.3
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 17/104 (16%)
Frame = +3
Query: 6 TPVPPPVTNEWISADNSSVGQMXXXXXXXXXXXXXXXXXMKLSQGPP----------TRL 155
TPVPPPV + W+ + + GPP +
Sbjct: 746 TPVPPPVDDTWLQNTSGHSPTPQRRPVSSVHPPGRPPAVRGPTPGPPLIPMPVGATSSFS 805
Query: 156 APSVPKSP---NIASNN---LIPPLIPQRPSSGGKN-TPNIPSR 266
AP +P P ++ +NN PP IP RP+ P +PSR
Sbjct: 806 APPIPSRPGPQSVFANNDPFSAPPQIPSRPARIPPGIPPGVPSR 849
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,717,468
Number of Sequences: 369166
Number of extensions: 913616
Number of successful extensions: 2320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2302
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)