Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_D11
(222 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34525|SPCS3_CAEEL Probable signal peptidase complex sub... 29 3.8
sp|P36796|VE2_HPV52 Regulatory protein E2 28 5.0
sp|P28843|DPP4_MOUSE Dipeptidyl peptidase 4 (Dipeptidyl pep... 28 8.4
>sp|P34525|SPCS3_CAEEL Probable signal peptidase complex subunit 3 (Microsomal signal
peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22)
Length = 180
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 14 RDVTDFENDKQTYTLNKIKFKEVFDFKSNRLW-VTNRFFYLVKSHNNKIGCVTGI 175
R+V D+ D+Q L + F DF W V F YLV + +K+ V +
Sbjct: 49 RNVVDYATDEQQADLATLNFNLKVDFSKIFNWNVKQLFVYLVAEYKSKVNEVNQV 103
>sp|P36796|VE2_HPV52 Regulatory protein E2
Length = 368
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 26 DFENDKQTYTLNKIKFKEV---FDFKSNRLWVTNRFFYLVKSHNN-KIGCVTGIKDVH 187
D+ N K+ Y L + + V D+ W Y VK N+ K CVTG+ +VH
Sbjct: 130 DYTNWKEIYLLGECECTIVEGQVDYYGLYYWCDGEKIYFVKFSNDAKQYCVTGVWEVH 187
>sp|P28843|DPP4_MOUSE Dipeptidyl peptidase 4 (Dipeptidyl peptidase IV) (DPP IV) (T-cell
activation antigen CD26) (Thymocyte-activating molecule)
(THAM) [Contains: Dipeptidyl peptidase 4 membrane form
(Dipeptidyl peptidase IV membrane form); Dipeptidyl
peptidase 4 soluble form (Dipeptidyl peptidase IV
soluble form)]
Length = 760
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 35 NDKQTYTLNKIKFKEVFDFKSNRLWVTNRFFYLVKSHNN 151
+ ++TY+L K F KS LW + F YL K NN
Sbjct: 36 DSRRTYSLADY-LKSTFRVKSYSLWWVSDFEYLYKQENN 73
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,048,697
Number of Sequences: 369166
Number of extensions: 398043
Number of successful extensions: 966
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 68,354,980
effective HSP length: 45
effective length of database: 60,041,905
effective search space used: 1681173340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)