Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_D02
(862 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BLR2|CPNE4_MOUSE Copine-4 (Copine IV) 72 2e-12
sp|Q96A23|CPNE4_HUMAN Copine-4 (Copine IV) (Copine-8) 72 2e-12
sp|Q9UBL6|CPNE7_HUMAN Copine-7 (Copine VII) 71 4e-12
sp|Q96FN4|CPNE2_HUMAN Copine-2 (Copine II) 70 8e-12
sp|Q8BT60|CPNE3_MOUSE Copine-3 (Copine III) 68 3e-11
sp|Q8C166|CPNE1_MOUSE Copine-1 (Copine I) 68 3e-11
sp|P59108|CPNE2_MOUSE Copine-2 (Copine II) 68 3e-11
sp|O75131|CPNE3_HUMAN Copine-3 (Copine III) 68 4e-11
sp|Q5RAE1|CPNE3_PONPY Copine-3 (Copine III) 68 4e-11
sp|Q9DC53|CPNE8_MOUSE Copine-8 (Copine VIII) 66 1e-10
>sp|Q8BLR2|CPNE4_MOUSE Copine-4 (Copine IV)
Length = 557
Score = 72.4 bits (176), Expect = 2e-12
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +1
Query: 586 DGSHYFILLILTDGTVDDWIETKKAVIEASFLPISIIXXXXXXXKFLDMKTLDQDFGLLK 765
+ S YFILLILTDG + D +T++A++ AS LP+S+I F DM+ LD D G+L+
Sbjct: 432 EASQYFILLILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGILR 491
Query: 766 -VGNEQACRDNVQFVPMRKF 822
E RD VQFVP R F
Sbjct: 492 SPKGEPVLRDIVQFVPFRNF 511
>sp|Q96A23|CPNE4_HUMAN Copine-4 (Copine IV) (Copine-8)
Length = 557
Score = 72.4 bits (176), Expect = 2e-12
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +1
Query: 586 DGSHYFILLILTDGTVDDWIETKKAVIEASFLPISIIXXXXXXXKFLDMKTLDQDFGLLK 765
+ S YFILLILTDG + D +T++A++ AS LP+S+I F DM+ LD D G+L+
Sbjct: 432 EASQYFILLILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGILR 491
Query: 766 -VGNEQACRDNVQFVPMRKF 822
E RD VQFVP R F
Sbjct: 492 SPKGEPVLRDIVQFVPFRNF 511
>sp|Q9UBL6|CPNE7_HUMAN Copine-7 (Copine VII)
Length = 633
Score = 70.9 bits (172), Expect = 4e-12
Identities = 43/85 (50%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Frame = +1
Query: 592 SHYFILLILTDGTVDDWIETKKAVIEASFLPISIIXXXXXXXKFLDMKTLDQDFGLLK-V 768
S Y+ILLILTDG V D +T++A++ AS LP+SII F DM+ LD D G+L+
Sbjct: 509 SQYYILLILTDGVVTDMADTREAIVRASRLPMSIIIVGVGNADFTDMQVLDGDDGVLRSP 568
Query: 769 GNEQACRDNVQFVPMR--KFLRPAA 837
E A RD VQFVP R K PAA
Sbjct: 569 RGEPALRDIVQFVPFRELKNASPAA 593
>sp|Q96FN4|CPNE2_HUMAN Copine-2 (Copine II)
Length = 548
Score = 70.1 bits (170), Expect = 8e-12
Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +1
Query: 571 AKQYCDGSHYFILLILTDGTVDDWIETKKAVIEASFLPISIIXXXXXXXKFLDMKTLDQD 750
A Q + YFILLI+TDG + D ET+ AV++AS LP+SII F M+ LD D
Sbjct: 427 ATQQRTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGD 486
Query: 751 FGLLKV-GNEQACRDNVQFVPMRKFLRPAAD 840
+L+ E+A RD VQFVP R+F A +
Sbjct: 487 SRMLRSHTGEEAARDIVQFVPFREFRNAAKE 517
>sp|Q8BT60|CPNE3_MOUSE Copine-3 (Copine III)
Length = 533
Score = 68.2 bits (165), Expect = 3e-11
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 571 AKQYCDGSHYFILLILTDGTVDDWIETKKAVIEASFLPISIIXXXXXXXKFLDMKTLDQD 750
A Q S YF+LLI+TDG + D ET++A++ A+ LP+SII F M+ LD D
Sbjct: 411 ATQQQTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDGD 470
Query: 751 FGLLKV-GNEQACRDNVQFVPMRKF 822
G L+ E A RD VQFVP R+F
Sbjct: 471 GGSLRAPSGEVAIRDIVQFVPFRQF 495
>sp|Q8C166|CPNE1_MOUSE Copine-1 (Copine I)
Length = 536
Score = 68.2 bits (165), Expect = 3e-11
Identities = 41/85 (48%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 571 AKQYCDGSHYFILLILTDGTVDDWIETKKAVIEASFLPISIIXXXXXXXKFLDMKTLDQD 750
A Q S YF+LL+LTDG V D T KAV++AS LP+S+I F M+ LD D
Sbjct: 404 AAQQRSASQYFVLLLLTDGAVTDVEATCKAVVDASKLPMSVIIVGVGGADFEVMEQLDAD 463
Query: 751 FGLLKV-GNEQACRDNVQFVPMRKF 822
G L+ E A RD VQFVP R+F
Sbjct: 464 GGPLRTRSGEAAARDIVQFVPYRRF 488
>sp|P59108|CPNE2_MOUSE Copine-2 (Copine II)
Length = 548
Score = 68.2 bits (165), Expect = 3e-11
Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +1
Query: 571 AKQYCDGSHYFILLILTDGTVDDWIETKKAVIEASFLPISIIXXXXXXXKFLDMKTLDQD 750
A Q + YFILLI+TDG + D ET+ AV++AS LP+SII F M+ LD D
Sbjct: 427 ATQQQTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGD 486
Query: 751 FGLLKV-GNEQACRDNVQFVPMRKFLRPAAD 840
L+ E+A RD VQFVP R+F A +
Sbjct: 487 NRRLRSHTGEEAARDIVQFVPFREFRNAAKE 517
>sp|O75131|CPNE3_HUMAN Copine-3 (Copine III)
Length = 537
Score = 67.8 bits (164), Expect = 4e-11
Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 571 AKQYCDGSHYFILLILTDGTVDDWIETKKAVIEASFLPISIIXXXXXXXKFLDMKTLDQD 750
A Q S YF+LLI+TDG + D ET++A++ AS LP+SII F M+ LD D
Sbjct: 411 ATQQQTASQYFVLLIITDGVITDLDETRQAIVNASRLPMSIIIVGVGGADFSAMEFLDGD 470
Query: 751 FGLLKVG-NEQACRDNVQFVPMRKF 822
G L+ E A RD VQFVP R+F
Sbjct: 471 GGSLRSPLGEVAIRDIVQFVPFRQF 495
>sp|Q5RAE1|CPNE3_PONPY Copine-3 (Copine III)
Length = 537
Score = 67.8 bits (164), Expect = 4e-11
Identities = 40/85 (47%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 571 AKQYCDGSHYFILLILTDGTVDDWIETKKAVIEASFLPISIIXXXXXXXKFLDMKTLDQD 750
A Q S YF+LLI+TDG + D ET++A++ AS LP+SII F M+ LD D
Sbjct: 411 AAQQQTASQYFVLLIITDGVITDLDETRQAIVNASRLPMSIIIVGVGGADFSAMEFLDGD 470
Query: 751 -FGLLKVGNEQACRDNVQFVPMRKF 822
GL E A RD VQFVP R+F
Sbjct: 471 GGGLRSPSGEVAIRDIVQFVPFRQF 495
>sp|Q9DC53|CPNE8_MOUSE Copine-8 (Copine VIII)
Length = 564
Score = 66.2 bits (160), Expect = 1e-10
Identities = 35/80 (43%), Positives = 49/80 (61%)
Frame = +1
Query: 586 DGSHYFILLILTDGTVDDWIETKKAVIEASFLPISIIXXXXXXXKFLDMKTLDQDFGLLK 765
DGS YF+LLI+TDG + D +TK++++ AS LP+SII +F M LD D +
Sbjct: 431 DGSQYFVLLIVTDGVISDMAQTKESIVNASKLPMSIIIVGVGPAEFDAMVELDGDDVRVS 490
Query: 766 VGNEQACRDNVQFVPMRKFL 825
+ A RD VQFVP R ++
Sbjct: 491 SRGKYAERDIVQFVPFRDYI 510
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,856,501
Number of Sequences: 369166
Number of extensions: 1976082
Number of successful extensions: 4465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4452
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)