Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_C20
(693 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26065|ACT_PLAMG Actin, adductor muscle 433 e-121
sp|P10984|ACT2_CAEEL Actin-2 431 e-121
sp|P92176|ACT2_LUMTE Actin-2 431 e-121
sp|P53464|ACTM_HELTB Actin, cytoskeletal (M) 431 e-120
sp|P53463|ACTM_HELER Actin, cytoskeletal (M) 431 e-120
sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cyt... 430 e-120
sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin) >gi|... 430 e-120
sp|P41341|ACTY_LIMPO Actin-11 430 e-120
sp|Q91ZK5|ACTB_SIGHI Actin, cytoplasmic 1 (Beta-actin) 430 e-120
sp|Q93129|ACTC_BRABE Actin, cytoplasmic (BbCA1) 430 e-120
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 433 bits (1114), Expect = e-121
Identities = 215/230 (93%), Positives = 222/230 (96%)
Frame = +3
Query: 3 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 182
+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG
Sbjct: 5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 183 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 362
ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
Query: 363 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 542
FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR
Sbjct: 125 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 184
Query: 543 DLTDYLMKILTERGYSFTTTADREIVRDIKRTLLHRSDLMQNETASASSS 692
DLTDYLMKILTERGYSFTTTA+REIVRDIK L + + +NE A+A+SS
Sbjct: 185 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFENEMATAASS 234
>sp|P10984|ACT2_CAEEL Actin-2
Length = 376
Score = 431 bits (1108), Expect = e-121
Identities = 214/230 (93%), Positives = 220/230 (95%)
Frame = +3
Query: 3 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 182
DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG
Sbjct: 5 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 183 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 362
ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
Query: 363 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 542
FETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR
Sbjct: 125 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 184
Query: 543 DLTDYLMKILTERGYSFTTTADREIVRDIKRTLLHRSDLMQNETASASSS 692
DLTDYLMKILTERGYSFTTTA+REIVRDIK L + + + E A+A+SS
Sbjct: 185 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS 234
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 431 bits (1108), Expect = e-121
Identities = 217/232 (93%), Positives = 222/232 (95%), Gaps = 2/232 (0%)
Frame = +3
Query: 3 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 182
DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG
Sbjct: 5 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 183 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 362
ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
Query: 363 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 542
FETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR
Sbjct: 125 FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 184
Query: 543 DLTDYLMKILTERGYSFTTTADREIVRDIKRTLLHRSDLMQNE--TASASSS 692
DLTDYLMKILTERGYSFTTTA+REIVRDIK L + + + E TASASSS
Sbjct: 185 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMNTASASSS 236
>sp|P53464|ACTM_HELTB Actin, cytoskeletal (M)
Length = 376
Score = 431 bits (1107), Expect = e-120
Identities = 213/230 (92%), Positives = 221/230 (96%)
Frame = +3
Query: 3 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 182
+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG
Sbjct: 5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 183 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 362
ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
Query: 363 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 542
FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR
Sbjct: 125 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 184
Query: 543 DLTDYLMKILTERGYSFTTTADREIVRDIKRTLLHRSDLMQNETASASSS 692
DLTDYLMKILTERGYSFTTTA+REIVRDIK L + + + E A+A++S
Sbjct: 185 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYTALDFEQEMATAAAS 234
>sp|P53463|ACTM_HELER Actin, cytoskeletal (M)
Length = 376
Score = 431 bits (1107), Expect = e-120
Identities = 213/230 (92%), Positives = 221/230 (96%)
Frame = +3
Query: 3 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 182
+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG
Sbjct: 5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 183 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 362
ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
Query: 363 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 542
FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR
Sbjct: 125 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 184
Query: 543 DLTDYLMKILTERGYSFTTTADREIVRDIKRTLLHRSDLMQNETASASSS 692
DLTDYLMKILTERGYSFTTTA+REIVRDIK L + + + E A+A++S
Sbjct: 185 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYSALDFEQEMATAAAS 234
>sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cytoplasmic beta actin)
Length = 375
Score = 430 bits (1105), Expect = e-120
Identities = 212/230 (92%), Positives = 220/230 (95%)
Frame = +3
Query: 3 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 182
D+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG
Sbjct: 4 DIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 183 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 362
ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 123
Query: 363 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 542
FETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLAGR
Sbjct: 124 FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 543 DLTDYLMKILTERGYSFTTTADREIVRDIKRTLLHRSDLMQNETASASSS 692
DLTDYLMKILTERGYSFTTTA+REIVRDIK L + + + E A+A+SS
Sbjct: 184 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS 233
>sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin)
sp|P60713|ACTB_SHEEP Actin, cytoplasmic 1 (Beta-actin)
sp|Q5R1X3|ACTB_PANTR Actin, cytoplasmic 1 (Beta-actin)
sp|P60710|ACTB_MOUSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q711N9|ACTB_MESAU Actin, cytoplasmic 1 (Beta-actin)
sp|P60708|ACTB_HORSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q76N69|ACTB_CERAE Actin, cytoplasmic 1 (Beta-actin)
sp|Q71FK5|ACTB_CAVPO Actin, cytoplasmic 1 (Beta-actin)
sp|P60707|ACTB_TRIVU Actin, cytoplasmic 1 (Beta-actin)
sp|P60711|ACTB_RAT Actin, cytoplasmic 1 (Beta-actin)
sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 (Beta-actin)
sp|P60706|ACTB_CHICK Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 430 bits (1105), Expect = e-120
Identities = 212/230 (92%), Positives = 220/230 (95%)
Frame = +3
Query: 3 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 182
D+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG
Sbjct: 4 DIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 183 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 362
ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 123
Query: 363 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 542
FETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLAGR
Sbjct: 124 FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 543 DLTDYLMKILTERGYSFTTTADREIVRDIKRTLLHRSDLMQNETASASSS 692
DLTDYLMKILTERGYSFTTTA+REIVRDIK L + + + E A+A+SS
Sbjct: 184 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS 233
>sp|P41341|ACTY_LIMPO Actin-11
Length = 376
Score = 430 bits (1105), Expect = e-120
Identities = 212/230 (92%), Positives = 220/230 (95%)
Frame = +3
Query: 3 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 182
DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG
Sbjct: 5 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 183 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 362
ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
Query: 363 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 542
FETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGR
Sbjct: 125 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 184
Query: 543 DLTDYLMKILTERGYSFTTTADREIVRDIKRTLLHRSDLMQNETASASSS 692
DLTDYLMK+LTERGYSFTTTA+REIVRDIK L + + +NE +A+SS
Sbjct: 185 DLTDYLMKVLTERGYSFTTTAEREIVRDIKEKLCYVALDFENEMTTAASS 234
>sp|Q91ZK5|ACTB_SIGHI Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 430 bits (1105), Expect = e-120
Identities = 212/230 (92%), Positives = 220/230 (95%)
Frame = +3
Query: 3 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 182
D+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG
Sbjct: 4 DIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 183 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 362
ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 123
Query: 363 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 542
FETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLAGR
Sbjct: 124 FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 543 DLTDYLMKILTERGYSFTTTADREIVRDIKRTLLHRSDLMQNETASASSS 692
DLTDYLMKILTERGYSFTTTA+REIVRDIK L + + + E A+A+SS
Sbjct: 184 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS 233
>sp|Q93129|ACTC_BRABE Actin, cytoplasmic (BbCA1)
Length = 375
Score = 430 bits (1105), Expect = e-120
Identities = 213/230 (92%), Positives = 221/230 (96%)
Frame = +3
Query: 3 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 182
DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG
Sbjct: 4 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 183 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 362
ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 123
Query: 363 FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 542
FETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGR
Sbjct: 124 FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 183
Query: 543 DLTDYLMKILTERGYSFTTTADREIVRDIKRTLLHRSDLMQNETASASSS 692
DLTDYLMKILTERGYSFTTTA+REIVRDIK L + + + E A+A+SS
Sbjct: 184 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS 233
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,342,501
Number of Sequences: 369166
Number of extensions: 1737632
Number of successful extensions: 6005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5912
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)