Planarian EST Database


Dr_sW_016_C18

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_016_C18
         (212 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P39310|YTFB_ECOLI  Hypothetical protein ytfB                    98   7e-21
sp|P39309|YTFA_ECOLI  Hypothetical protein ytfA                    52   4e-07
sp|Q8IN94|OSA_DROME  Trithorax group protein osa (Eyelid pro...    30   1.3  
sp|P44928|EMRA_HAEIN  Multidrug resistance protein A homolog       28   6.5  
>sp|P39310|YTFB_ECOLI Hypothetical protein ytfB
          Length = 212

 Score = 97.8 bits (242), Expect = 7e-21
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = +1

Query: 4   PLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR 147
           PLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR
Sbjct: 165 PLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR 212
>sp|P39309|YTFA_ECOLI Hypothetical protein ytfA
          Length = 108

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -2

Query: 211 EARRKVIKETLLSWLLVDPSSTAHE 137
           EARRKVIKET+LSWLLVDPSSTAHE
Sbjct: 84  EARRKVIKETILSWLLVDPSSTAHE 108
>sp|Q8IN94|OSA_DROME Trithorax group protein osa (Eyelid protein)
          Length = 2716

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 94  YSPYQWLSPSPRRWRSGGFSPSARFANY 11
           Y PYQW+ PSP++   GG    A   N+
Sbjct: 714 YPPYQWVPPSPQQTVPGGAPGGAMVGNH 741
>sp|P44928|EMRA_HAEIN Multidrug resistance protein A homolog
          Length = 390

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
 Frame = +1

Query: 7   LSNLQNGQMVKIR-------QNASGVVTGLTIDTGNNQQVLFTRQPDGSFIR 141
           L+N++ GQ VKI        +   GV+ G+ + TGN   +L ++   G++I+
Sbjct: 263 LTNMRIGQPVKIHFDLYGKNKEFDGVINGIEMGTGNAFSLLPSQNATGNWIK 314
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,619,919
Number of Sequences: 369166
Number of extensions: 513134
Number of successful extensions: 1234
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 68,354,980
effective HSP length: 42
effective length of database: 60,596,110
effective search space used: 1696691080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)