Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_C18
(212 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39310|YTFB_ECOLI Hypothetical protein ytfB 98 7e-21
sp|P39309|YTFA_ECOLI Hypothetical protein ytfA 52 4e-07
sp|Q8IN94|OSA_DROME Trithorax group protein osa (Eyelid pro... 30 1.3
sp|P44928|EMRA_HAEIN Multidrug resistance protein A homolog 28 6.5
>sp|P39310|YTFB_ECOLI Hypothetical protein ytfB
Length = 212
Score = 97.8 bits (242), Expect = 7e-21
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +1
Query: 4 PLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR 147
PLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR
Sbjct: 165 PLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR 212
>sp|P39309|YTFA_ECOLI Hypothetical protein ytfA
Length = 108
Score = 52.0 bits (123), Expect = 4e-07
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = -2
Query: 211 EARRKVIKETLLSWLLVDPSSTAHE 137
EARRKVIKET+LSWLLVDPSSTAHE
Sbjct: 84 EARRKVIKETILSWLLVDPSSTAHE 108
>sp|Q8IN94|OSA_DROME Trithorax group protein osa (Eyelid protein)
Length = 2716
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 94 YSPYQWLSPSPRRWRSGGFSPSARFANY 11
Y PYQW+ PSP++ GG A N+
Sbjct: 714 YPPYQWVPPSPQQTVPGGAPGGAMVGNH 741
>sp|P44928|EMRA_HAEIN Multidrug resistance protein A homolog
Length = 390
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Frame = +1
Query: 7 LSNLQNGQMVKIR-------QNASGVVTGLTIDTGNNQQVLFTRQPDGSFIR 141
L+N++ GQ VKI + GV+ G+ + TGN +L ++ G++I+
Sbjct: 263 LTNMRIGQPVKIHFDLYGKNKEFDGVINGIEMGTGNAFSLLPSQNATGNWIK 314
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,619,919
Number of Sequences: 369166
Number of extensions: 513134
Number of successful extensions: 1234
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 68,354,980
effective HSP length: 42
effective length of database: 60,596,110
effective search space used: 1696691080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)