Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_C14
(398 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 202 3e-52
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 192 2e-49
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 191 3e-49
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 191 4e-49
sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 189 2e-48
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 189 2e-48
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 188 3e-48
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 187 5e-48
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 186 1e-47
sp|Q07760|RL23_TOBAC 60S ribosomal protein L23 183 1e-46
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 202 bits (513), Expect = 3e-52
Identities = 95/116 (81%), Positives = 108/116 (93%)
Frame = +3
Query: 3 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKK 182
ISLGLPV AV+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSVKKGKPELRKK
Sbjct: 16 ISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKK 75
Query: 183 VLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 350
VLQGVVIRQRK ++RKDGT I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 76 VLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 192 bits (489), Expect = 2e-49
Identities = 94/116 (81%), Positives = 103/116 (88%)
Frame = +3
Query: 3 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKK 182
ISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKK
Sbjct: 16 ISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKK 75
Query: 183 VLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 350
V VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 76 VHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 191 bits (486), Expect = 3e-49
Identities = 93/116 (80%), Positives = 103/116 (88%)
Frame = +3
Query: 3 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKK 182
ISLGLPV AVINCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKPELRKK
Sbjct: 16 ISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKK 75
Query: 183 VLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 350
V VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 76 VHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 191 bits (485), Expect = 4e-49
Identities = 93/116 (80%), Positives = 103/116 (88%)
Frame = +3
Query: 3 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKK 182
ISLGLPV AVINCADN+GAKN+YIISV G K +LNRLPAA VGDMV+ +VKKGKPELRKK
Sbjct: 16 ISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKK 75
Query: 183 VLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 350
V VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 76 VHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
Length = 140
Score = 189 bits (479), Expect = 2e-48
Identities = 90/116 (77%), Positives = 103/116 (88%)
Frame = +3
Query: 3 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKK 182
ISLGLPV AV+NCADN+GAKN+++I+V G K RLNRLP+A VGDM V SVKKGKPELRKK
Sbjct: 16 ISLGLPVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKK 75
Query: 183 VLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 350
VLQ VV+RQRK Y+R DG+ I FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP+
Sbjct: 76 VLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPR 131
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 189 bits (479), Expect = 2e-48
Identities = 89/116 (76%), Positives = 103/116 (88%)
Frame = +3
Query: 3 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKK 182
ISLGLPV AVINCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELRKK
Sbjct: 16 ISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKK 75
Query: 183 VLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 350
V+ VVIRQRK ++R+DG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 76 VMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 188 bits (478), Expect = 3e-48
Identities = 89/116 (76%), Positives = 103/116 (88%)
Frame = +3
Query: 3 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKK 182
ISLGLPV AV+NCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELRKK
Sbjct: 16 ISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKK 75
Query: 183 VLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 350
V+ VVIRQRK ++R+DG I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 76 VMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 187 bits (476), Expect = 5e-48
Identities = 92/115 (80%), Positives = 100/115 (86%)
Frame = +3
Query: 3 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKK 182
ISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKP LRKK
Sbjct: 16 ISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKK 75
Query: 183 VLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWP 347
V VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP
Sbjct: 76 VHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWP 130
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 186 bits (472), Expect = 1e-47
Identities = 84/116 (72%), Positives = 105/116 (90%)
Frame = +3
Query: 3 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKK 182
++LGLPV A++NCADNSGAKN+YI+SVFGT +RLNRLPAA+ GDMV+ +VKKGKP+LRKK
Sbjct: 15 MTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKK 74
Query: 183 VLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 350
++ +V+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGPVAKECAD+WP+
Sbjct: 75 IMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>sp|Q07760|RL23_TOBAC 60S ribosomal protein L23
Length = 140
Score = 183 bits (464), Expect = 1e-46
Identities = 86/116 (74%), Positives = 102/116 (87%)
Frame = +3
Query: 3 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKK 182
+SLGLPVAA INCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKP+LRKK
Sbjct: 16 MSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75
Query: 183 VLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 350
V+ VV+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGP+ KECAD+WP+
Sbjct: 76 VMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPR 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,606,398
Number of Sequences: 369166
Number of extensions: 894447
Number of successful extensions: 2278
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2206
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)