Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_C07
(576 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O13915|YDWA_SCHPO Hypothetical protein C23C11.10 in chro... 30 5.7
sp|Q9JLC8|SACS_MOUSE Sacsin 29 7.4
sp|Q8IQ72|GR65A_DROME Putative chemosensory receptor 65a 29 7.4
sp|Q66431|RRPL_DUGBV RNA-directed RNA polymerase (L protein) 29 9.6
sp|Q97N32|RECF_CLOAB DNA replication and repair protein recF 29 9.6
sp|Q8CXB4|UVRC_OCEIH UvrABC system protein C (UvrC protein)... 29 9.6
>sp|O13915|YDWA_SCHPO Hypothetical protein C23C11.10 in chromosome I
Length = 265
Score = 29.6 bits (65), Expect = 5.7
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -2
Query: 470 LSMRRKTFRLVK---LMENEFSRSLLSFHCIIHDENLFEFAQQLQGVMEKVVKIVNKVIA 300
L+ R FRL K L +E +R L+F C DEN + M+ + N+ +
Sbjct: 137 LNYRTLKFRLGKMCLLFNDEKTRMFLAFECKFSDENYKDLISHASDCMK---EFTNRNLR 193
Query: 299 RSALIHRHFKAFLEEIESKYED 234
L+H F + L E +Y++
Sbjct: 194 EDFLLHISFASSLTN-EDEYQN 214
>sp|Q9JLC8|SACS_MOUSE Sacsin
Length = 3830
Score = 29.3 bits (64), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 464 MRRKTFRLVKLMENEFSRSLLSFHC 390
++ TFR KLMEN+F L+ F+C
Sbjct: 2619 VQTSTFRTEKLMENDFEALLMYFNC 2643
>sp|Q8IQ72|GR65A_DROME Putative chemosensory receptor 65a
Length = 408
Score = 29.3 bits (64), Expect = 7.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 404 LSFHCIIHDENLFEFAQQLQGVMEKVVKIVNKVIARSALIHRHFK 270
L H + +QLQG+ EK++++ V + I RHF+
Sbjct: 246 LRLHSVHESGQFMVLVKQLQGITEKLIRLRQNVFHITVRIIRHFR 290
>sp|Q66431|RRPL_DUGBV RNA-directed RNA polymerase (L protein)
Length = 4036
Score = 28.9 bits (63), Expect = 9.6
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -2
Query: 527 NKEIRDYKVN*FSIKTDGALSMRRKTFRLVKLMENEFSRSLLSFHCIIHDENLFEFAQQL 348
NKEI DY L +RK K + FS + F +I + ++
Sbjct: 1352 NKEIADY------------LETKRKNLLSEKASDKIFSSDCILFKEVIAEALRRYYSTPY 1399
Query: 347 QGVMEKVVKIVN 312
+GV E +VK++N
Sbjct: 1400 EGVPETIVKLIN 1411
>sp|Q97N32|RECF_CLOAB DNA replication and repair protein recF
Length = 363
Score = 28.9 bits (63), Expect = 9.6
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 386 IHDENLFEFAQQLQGVMEKVVKIVNKVIARSALIHRHFKAFLEEIESKY 240
++DE L +F L +E +K +NK+ + +IH EEIE Y
Sbjct: 178 VYDEQLSKFGSSL---IESRIKYLNKLNEKGKIIHSDITKGKEEIEFTY 223
>sp|Q8CXB4|UVRC_OCEIH UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
Length = 596
Score = 28.9 bits (63), Expect = 9.6
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = -2
Query: 470 LSMRRKTFRLVKLMENEFSRSLLSFHCIIHDENLFEF-AQQLQGVMEKVVKIVNKVIARS 294
L + + F LV+ +++E R ++FH + ++LF+ ++ GV EK R
Sbjct: 501 LERQSQAFYLVQRIQDEVHRFAITFHRQLRGKSLFQSELDKIPGVGEK----------RR 550
Query: 293 ALIHRHFKAFLEEIESKYED 234
L+ HFK+ + ++ ED
Sbjct: 551 KLLLSHFKSINQIKKASIED 570
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,378,513
Number of Sequences: 369166
Number of extensions: 1103459
Number of successful extensions: 2439
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2438
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)