Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_C06
(130 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P67560|OPGC_SHIFL Glucans biosynthesis protein C >gi|540... 30 2.2
sp|P75920|OPGC_ECOLI Glucans biosynthesis protein C 30 2.2
sp|Q8X9I6|OPGC_ECO57 Glucans biosynthesis protein C 30 2.2
sp|Q8Z7L9|OPGC_SALTI Glucans biosynthesis protein C 28 6.5
sp|Q8ZQ27|OPGC_SALTY Glucans biosynthesis protein C 28 6.5
sp|Q57QK9|OPGC_SALCH Glucans biosynthesis protein C 28 6.5
sp|Q5PGX5|OPGC_SALPA Glucans biosynthesis protein C 28 6.5
>sp|P67560|OPGC_SHIFL Glucans biosynthesis protein C
sp|P67559|OPGC_ECOL6 Glucans biosynthesis protein C
Length = 385
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 124 TFFENCKTFVGTFHIDLSAFFGTFYRIHNTSN 29
T+F N F+ H L+ FFG + H TSN
Sbjct: 306 TYFVNASLFIYLVHHPLTLFFGAYITPHITSN 337
>sp|P75920|OPGC_ECOLI Glucans biosynthesis protein C
Length = 385
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 124 TFFENCKTFVGTFHIDLSAFFGTFYRIHNTSN 29
T+F N F+ H L+ FFG + H TSN
Sbjct: 306 TYFVNASLFIYLVHHPLTLFFGAYITPHITSN 337
>sp|Q8X9I6|OPGC_ECO57 Glucans biosynthesis protein C
Length = 385
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 124 TFFENCKTFVGTFHIDLSAFFGTFYRIHNTSN 29
T+F N F+ H L+ FFG + H TSN
Sbjct: 306 TYFVNASLFIYLVHHPLTLFFGAYITPHITSN 337
>sp|Q8Z7L9|OPGC_SALTI Glucans biosynthesis protein C
Length = 384
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 124 TFFENCKTFVGTFHIDLSAFFGTFYRIHNTSN 29
T+F N F+ H L+ FFG + H +SN
Sbjct: 306 TYFVNASLFIYLVHHPLTLFFGAYITPHISSN 337
>sp|Q8ZQ27|OPGC_SALTY Glucans biosynthesis protein C
Length = 384
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 124 TFFENCKTFVGTFHIDLSAFFGTFYRIHNTSN 29
T+F N F+ H L+ FFG + H +SN
Sbjct: 306 TYFVNASLFIYLVHHPLTLFFGAYITPHISSN 337
>sp|Q57QK9|OPGC_SALCH Glucans biosynthesis protein C
Length = 384
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 124 TFFENCKTFVGTFHIDLSAFFGTFYRIHNTSN 29
T+F N F+ H L+ FFG + H +SN
Sbjct: 306 TYFVNASLFIYLVHHPLTLFFGAYITPHISSN 337
>sp|Q5PGX5|OPGC_SALPA Glucans biosynthesis protein C
Length = 384
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 124 TFFENCKTFVGTFHIDLSAFFGTFYRIHNTSN 29
T+F N F+ H L+ FFG + H +SN
Sbjct: 306 TYFVNASLFIYLVHHPLTLFFGAYITPHISSN 337
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,105,380
Number of Sequences: 369166
Number of extensions: 246997
Number of successful extensions: 950
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 68,354,980
effective HSP length: 16
effective length of database: 65,399,220
effective search space used: 1700379720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)