Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_B19
(575 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 ... 229 5e-60
sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 ... 228 1e-59
sp|P50890|RSSA_CHICK 40S ribosomal protein SA (p40) (34/67 ... 226 2e-59
sp|P08865|RSSA_HUMAN 40S ribosomal protein SA (p40) (34/67 ... 226 4e-59
sp|P38983|RSSA_RAT 40S ribosomal protein SA (p40) (34/67 kD... 226 4e-59
sp|P14206|RSSA_MOUSE 40S ribosomal protein SA (p40) (34/67 ... 225 5e-59
sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubar... 225 5e-59
sp|P38982|RSSA_CRIGR 40S ribosomal protein SA (p40) (34/67 ... 225 7e-59
sp|P26452|RSSA_BOVIN 40S ribosomal protein SA (p40) (C10 pr... 224 2e-58
sp|P38984|RSSA_CHLVR 40S ribosomal protein SA (p40) (33 kDa... 209 3e-54
>sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 317
Score = 229 bits (583), Expect = 5e-60
Identities = 110/162 (67%), Positives = 129/162 (79%)
Frame = +3
Query: 27 HIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSS 206
H+GANN +FQM+QYV+ R G I + K +EK+ LAARAIAA+EN D+CVIS+RP
Sbjct: 24 HLGANNVDFQMEQYVYKRRPDGTSIINVRKTWEKVLLAARAIAAIENPADICVISARPYG 83
Query: 207 QRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIP 386
QR VLKF YTGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP DHQ V E+S+VNIP
Sbjct: 84 QRAVLKFAHYTGATPIAGRFTPGTFTNQIQTAFREPRLLVVTDPYTDHQPVTEASYVNIP 143
Query: 387 VIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRM 512
VIA NTDS +KYVDI IPCNNK S+GLMW++LAREV R+
Sbjct: 144 VIALTNTDSPLKYVDIAIPCNNKSIHSVGLMWWMLAREVLRL 185
>sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 316
Score = 228 bits (580), Expect = 1e-59
Identities = 108/167 (64%), Positives = 133/167 (79%)
Frame = +3
Query: 12 IKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVIS 191
+ +G HIG++N ++QM QYV+ R G +I L + +EKL +AAR I A+EN DVCVIS
Sbjct: 19 LASGAHIGSSNLDYQMTQYVYKRKPDGTYIINLRRTWEKLLMAARIIVAIENPADVCVIS 78
Query: 192 SRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESS 371
SRP QR VLKFG +TGA PIAGR+TPGTFTNQIQ AFREPR+LIV+DP +DHQ V E+S
Sbjct: 79 SRPYGQRAVLKFGAHTGATPIAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEAS 138
Query: 372 FVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRM 512
+VNIPVIA CNTDS ++YVDI IPCNNK SIGLMW++L+REV R+
Sbjct: 139 YVNIPVIALCNTDSPLRYVDIAIPCNNKSIHSIGLMWWMLSREVLRL 185
>sp|P50890|RSSA_CHICK 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (37LRP)
Length = 296
Score = 226 bits (577), Expect = 2e-59
Identities = 109/167 (65%), Positives = 130/167 (77%)
Frame = +3
Query: 12 IKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVIS 191
+ AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VIS
Sbjct: 19 LAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVIS 78
Query: 192 SRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESS 371
SR + QR VLKF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S
Sbjct: 79 SRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEAS 138
Query: 372 FVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRM 512
+VNIP IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM
Sbjct: 139 YVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRM 185
>sp|P08865|RSSA_HUMAN 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (Colon
carcinoma laminin-binding protein) (NEM/1CHD4)
(Multidrug resistance-associated protein MGr1-Ag)
Length = 295
Score = 226 bits (575), Expect = 4e-59
Identities = 108/167 (64%), Positives = 130/167 (77%)
Frame = +3
Query: 12 IKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVIS 191
+ AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VIS
Sbjct: 19 LAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVIS 78
Query: 192 SRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESS 371
SR + QR VLKF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S
Sbjct: 79 SRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEAS 138
Query: 372 FVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRM 512
+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM
Sbjct: 139 YVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRM 185
>sp|P38983|RSSA_RAT 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 226 bits (575), Expect = 4e-59
Identities = 108/167 (64%), Positives = 130/167 (77%)
Frame = +3
Query: 12 IKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVIS 191
+ AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VIS
Sbjct: 19 LAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVIS 78
Query: 192 SRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESS 371
SR + QR VLKF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S
Sbjct: 79 SRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEAS 138
Query: 372 FVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRM 512
+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM
Sbjct: 139 YVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRM 185
>sp|P14206|RSSA_MOUSE 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 225 bits (574), Expect = 5e-59
Identities = 108/168 (64%), Positives = 130/168 (77%)
Frame = +3
Query: 9 MIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVI 188
++ AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VI
Sbjct: 18 LLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVI 77
Query: 189 SSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIES 368
SSR + QR VLKF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+
Sbjct: 78 SSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEA 137
Query: 369 SFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRM 512
S+VN+P IA CNTDS + YVDI IPCNNKG S+GLMW++LAREV RM
Sbjct: 138 SYVNLPTIALCNTDSPLAYVDIAIPCNNKGAHSVGLMWWMLAREVLRM 185
>sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubarista protein) (Laminin
receptor homolog) (K14)
Length = 270
Score = 225 bits (574), Expect = 5e-59
Identities = 109/168 (64%), Positives = 130/168 (77%)
Frame = +3
Query: 9 MIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVI 188
M+ A H+G+ N NFQM+QYV+ R G I L K +EKLQLAARAI A++N D+ VI
Sbjct: 18 MLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVI 77
Query: 189 SSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIES 368
SSRP QR VLKF +YT PIAGRFTPG FTNQIQ AFREPRLL+V+DP DHQ ++E+
Sbjct: 78 SSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEA 137
Query: 369 SFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRM 512
S+VNIPVIAF NTDS ++Y+DI IPCNNK SIGLMW+LLAREV R+
Sbjct: 138 SYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRL 185
Score = 29.3 bits (64), Expect = 7.4
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 515 GGISRSIEWDVKVDLFINR 571
G ISRS+EW V VDLF R
Sbjct: 187 GTISRSVEWPVVVDLFFYR 205
>sp|P38982|RSSA_CRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 225 bits (573), Expect = 7e-59
Identities = 108/167 (64%), Positives = 130/167 (77%)
Frame = +3
Query: 12 IKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVIS 191
+ AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VIS
Sbjct: 19 LAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVIS 78
Query: 192 SRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESS 371
SR + QR VLKF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S
Sbjct: 79 SRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEAS 138
Query: 372 FVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRM 512
+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM
Sbjct: 139 YVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRM 185
>sp|P26452|RSSA_BOVIN 40S ribosomal protein SA (p40) (C10 protein)
Length = 295
Score = 224 bits (570), Expect = 2e-58
Identities = 107/167 (64%), Positives = 129/167 (77%)
Frame = +3
Query: 12 IKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVIS 191
+ AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VIS
Sbjct: 19 LAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVIS 78
Query: 192 SRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESS 371
SR + QR VLKF TGA PIAGRFTPG FTNQIQ AFREPRLL+V+DP ADHQ + E+S
Sbjct: 79 SRNTGQRAVLKFAAATGATPIAGRFTPGNFTNQIQAAFREPRLLVVTDPRADHQPLTEAS 138
Query: 372 FVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRM 512
+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM
Sbjct: 139 YVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRM 185
>sp|P38984|RSSA_CHLVR 40S ribosomal protein SA (p40) (33 kDa laminin binding protein)
Length = 293
Score = 209 bits (533), Expect = 3e-54
Identities = 105/170 (61%), Positives = 125/170 (73%)
Frame = +3
Query: 12 IKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVIS 191
+ AGVH+G+ N YVF R G I L K +EKL LAAR IA++EN DVCVIS
Sbjct: 19 LAAGVHLGSTNVGSSCQGYVFKRKSDGIHIINLRKTWEKLILAARIIASIENPADVCVIS 78
Query: 192 SRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESS 371
SRP R VLKF + TGA PIAGRFTPGTFTNQIQK FREPRLLI +DP D+QA+ E+S
Sbjct: 79 SRPYGTRAVLKFAQSTGAIPIAGRFTPGTFTNQIQKRFREPRLLISTDPQHDNQALTEAS 138
Query: 372 FVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMEAV 521
+VNIPVIA CNTDS +++VD IPCNN+G QSIG MW++LAREV + +
Sbjct: 139 YVNIPVIALCNTDSPLRFVDCAIPCNNRGIQSIGTMWWILAREVLHLRGI 188
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,449,300
Number of Sequences: 369166
Number of extensions: 1156302
Number of successful extensions: 3364
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3343
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)