Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_B04
(827 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA lig... 393 e-109
sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA lig... 393 e-109
sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA lig... 392 e-109
sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA lig... 391 e-108
sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA lig... 384 e-106
sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA lig... 374 e-103
sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Ly... 354 2e-97
sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA lig... 333 3e-91
sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase (Lysine--tRNA lig... 264 3e-70
sp|Q8KCM7|SYK_CHLTE Lysyl-tRNA synthetase (Lysine--tRNA lig... 256 4e-68
>sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 393 bits (1010), Expect = e-109
Identities = 185/278 (66%), Positives = 228/278 (82%), Gaps = 3/278 (1%)
Frame = +3
Query: 3 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 182
GA AKPF TYHN+ +M++Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFT
Sbjct: 277 GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 336
Query: 183 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 353
TCEFYMA+ADY DL+ +TE +LS +VK + G Y + Y+ DG + YEIDF PP++RI M
Sbjct: 337 TCEFYMAYADYHDLMEITEKMLSGMVKSITGSYKITYHPDGPEGEAYEIDFTPPFRRISM 396
Query: 354 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 533
+ LE+AL +KLP + TEE+R ILD IC VEC PRTTARLLDKLVGE+LE C
Sbjct: 397 VEELEKALGVKLPETSLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 456
Query: 534 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 713
INPTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CNAYTELNDP+ QR+ FE+QA
Sbjct: 457 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQA 516
Query: 714 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRL 827
K KAAGD+EAMF+DE F A+E G+PPTAGWG+GIDR+
Sbjct: 517 KAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRV 554
>sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 595
Score = 393 bits (1009), Expect = e-109
Identities = 184/278 (66%), Positives = 228/278 (82%), Gaps = 3/278 (1%)
Frame = +3
Query: 3 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 182
GA AKPF TYHN+ +M++Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFT
Sbjct: 275 GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 334
Query: 183 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 353
TCEFYMA+ADY DL+ +TE +LS +VK + G Y + Y+ DG + YE+DF PP++RI M
Sbjct: 335 TCEFYMAYADYHDLMEITEKMLSGMVKSITGSYKITYHPDGPEGQAYEVDFTPPFRRISM 394
Query: 354 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 533
+ LE+AL +KLP + TEE+R ILD IC VEC PRTTARLLDKLVGE+LE C
Sbjct: 395 VEELEKALGVKLPETSLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 454
Query: 534 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 713
I+PTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CNAYTELNDP+ QR+ FE+QA
Sbjct: 455 ISPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 514
Query: 714 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRL 827
K KAAGD+EAMF+DE F A+E G+PPTAGWG+GIDRL
Sbjct: 515 KAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRL 552
>sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 392 bits (1008), Expect = e-109
Identities = 184/278 (66%), Positives = 228/278 (82%), Gaps = 3/278 (1%)
Frame = +3
Query: 3 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 182
GA AKPF TYHN+ +M++Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFT
Sbjct: 277 GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 336
Query: 183 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 353
TCEFYMA+ADY DL+ +TE ++S +VK + G Y V Y+ DG + Y++DF PP++RI+M
Sbjct: 337 TCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINM 396
Query: 354 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 533
+ LE+AL MKLP TEE+R ILD IC VEC PRTTARLLDKLVGE+LE C
Sbjct: 397 VEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 456
Query: 534 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 713
INPTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CNAYTELNDP+ QR+ FE+QA
Sbjct: 457 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQA 516
Query: 714 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRL 827
K KAAGD+EAMF+DE F A+E G+PPTAGWG+GIDR+
Sbjct: 517 KAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRV 554
>sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 572
Score = 391 bits (1005), Expect = e-108
Identities = 179/279 (64%), Positives = 228/279 (81%), Gaps = 4/279 (1%)
Frame = +3
Query: 3 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 182
GA AKPF T+HND +M+++LR+APEL+ K L++GG++RV+E+G+ FRNE +DLTHNPEFT
Sbjct: 256 GATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDRVYEVGRLFRNEGIDLTHNPEFT 315
Query: 183 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDGKT----YEIDFKPPYQRID 350
TCEFYMA+ADY D+I +TEDLLS++V + G Y ++Y+ +G YE+DF PP++R+
Sbjct: 316 TCEFYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVH 375
Query: 351 MMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEK 530
M GL E L LP P+ L TEE+R + DK+C DNNV+CSAPRTTARLLDKLVGEYLE
Sbjct: 376 MYDGLAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEYLEST 435
Query: 531 CINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQ 710
I+PTF++ HP+IMSPLAKWHR++PGLTERFELF + +E+ NAYTELNDPI QR+RFEQQ
Sbjct: 436 FISPTFLIGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQRFEQQ 495
Query: 711 AKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRL 827
AKDK AGD+EA +DETF A+E G+PPT GWG+GIDRL
Sbjct: 496 AKDKDAGDDEAQMIDETFCNALEYGLPPTGGWGMGIDRL 534
>sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 602
Score = 384 bits (985), Expect = e-106
Identities = 180/278 (64%), Positives = 226/278 (81%), Gaps = 3/278 (1%)
Frame = +3
Query: 3 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 182
GAAA+PF T+HN+ NM +Y+RIAPEL+LKEL++GG++RV+EIGKQFRNE +DLTHNPEFT
Sbjct: 304 GAAARPFVTHHNELNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFT 363
Query: 183 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 353
TCEFYMA+ADY DLI +TE +LS +VKEL G Y +KY+ +G EIDF PP+++IDM
Sbjct: 364 TCEFYMAYADYNDLIELTETMLSGMVKELTGGYKIKYHANGVEKPPIEIDFTPPFRKIDM 423
Query: 354 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 533
+ LE K+ +P +L ++E+ L CA +V+C P+TT RLLDKLVG +LEE C
Sbjct: 424 IEELEAMAKLNIP--KDLSSDEANKYLIDACAKYDVKCPPPQTTTRLLDKLVGHFLEETC 481
Query: 534 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 713
+NPTFI+NHPEIMSPLAKWHR+ PGLTERFELFV K E+CNAYTELNDP+VQR+RFE+Q
Sbjct: 482 VNPTFIINHPEIMSPLAKWHRSRPGLTERFELFVNKHEVCNAYTELNDPVVQRQRFEEQL 541
Query: 714 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRL 827
KD+ +GD+EAM +DETF A+E G+PPT GWGLGIDRL
Sbjct: 542 KDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRL 579
>sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 626
Score = 374 bits (961), Expect = e-103
Identities = 179/278 (64%), Positives = 222/278 (79%), Gaps = 3/278 (1%)
Frame = +3
Query: 3 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 182
GAAA+PF T+HND +M +Y+RIAPEL+LK+LI+GG+ RV+EIGKQFRNE +DLTHNPEFT
Sbjct: 313 GAAARPFVTHHNDLDMRLYMRIAPELYLKQLIVGGLERVYEIGKQFRNEGIDLTHNPEFT 372
Query: 183 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 353
TCEFYMAFADY DL+ +TE +LS +VKEL G Y +KYN +G EIDF PP++RI+M
Sbjct: 373 TCEFYMAFADYNDLMEMTEVMLSGMVKELTGGYKIKYNANGYDKDPIEIDFTPPFRRIEM 432
Query: 354 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 533
+ LE+ K+ +P +L +EE+ L CA +V+C P+TTARLLDKLVGE+LE C
Sbjct: 433 IGELEKVAKLNIP--KDLASEEANKYLIDACARFDVKCPPPQTTARLLDKLVGEFLEPTC 490
Query: 534 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 713
+NPTFI+N PEIMSPLAKWHR+ GLTERFELF+ K ELCNAYTELNDP+VQR+RF Q
Sbjct: 491 VNPTFIINQPEIMSPLAKWHRSKSGLTERFELFINKHELCNAYTELNDPVVQRQRFADQL 550
Query: 714 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRL 827
KD+ +GD+EAM +DETF A+E G+ PT GWGLGIDRL
Sbjct: 551 KDRQSGDDEAMALDETFCNALEYGLAPTGGWGLGIDRL 588
>sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Lysine--tRNA ligase) (LysRS)
Length = 591
Score = 354 bits (908), Expect = 2e-97
Identities = 168/279 (60%), Positives = 213/279 (76%), Gaps = 4/279 (1%)
Frame = +3
Query: 3 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 182
GA AKPF T+HND +MDMY+RIAPELFLK+L++GG++RV+EIG+QFRNE +D+THNPEFT
Sbjct: 280 GATAKPFITHHNDLDMDMYMRIAPELFLKQLVVGGLDRVYEIGRQFRNEGIDMTHNPEFT 339
Query: 183 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKD----GKTYEIDFKPPYQRID 350
TCEFY A+AD +DL+ +TE + S +VKE+ G YI+KY+ D K E++F P++RI+
Sbjct: 340 TCEFYQAYADVYDLMDMTELMFSEMVKEITGSYIIKYHPDPADPAKELELNFSRPWKRIN 399
Query: 351 MMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEK 530
M+ LE+ +K P +L T E+ L KI DN +EC P T AR+LDKLVGE LE+
Sbjct: 400 MIEELEKVFNVKFPSGDQLHTAETGEFLKKILVDNKLECPPPLTNARMLDKLVGE-LEDT 458
Query: 531 CINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQ 710
CINPTFI HP++MSPLAK+ R+ PGL ERFE+FV KE+CNAYTELNDP QR RFE+Q
Sbjct: 459 CINPTFIFGHPQMMSPLAKYSRDQPGLCERFEVFVATKEICNAYTELNDPFDQRARFEEQ 518
Query: 711 AKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRL 827
A+ K GD+EA VDETF A+E G+PPT GWG GIDRL
Sbjct: 519 ARQKDQGDDEAQLVDETFCNALEYGLPPTGGWGCGIDRL 557
>sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 588
Score = 333 bits (855), Expect = 3e-91
Identities = 155/278 (55%), Positives = 214/278 (76%), Gaps = 3/278 (1%)
Frame = +3
Query: 3 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 182
GA+A+PF T+HN+ + ++ +R++PEL+LK+L++GG +RV+E+GK FRNE +DLTH+PEFT
Sbjct: 291 GASARPFITHHNELDTELLIRVSPELYLKKLVVGGFDRVYELGKHFRNEGMDLTHSPEFT 350
Query: 183 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 353
CE YMA+ADY DL+ +TE LLS +VK+L G Y ++Y+ +G + EIDF PP+++IDM
Sbjct: 351 MCELYMAYADYNDLMDLTEQLLSGMVKDLTGSYKIRYHANGLDNEPIEIDFTPPFRKIDM 410
Query: 354 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 533
++ LE+ + +P +L +E + L +C +V+C P TT RLLDKLVG ++E C
Sbjct: 411 LSELEKVANISIP--RDLSSESANKHLVDVCEKFDVKCPPPHTTTRLLDKLVGHFIEVNC 468
Query: 534 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 713
INPTFI+NHPEIMSPLAK R+ PGLTERF LFV ++ELC+AYTELNDP QRERF +Q
Sbjct: 469 INPTFIINHPEIMSPLAKSRRSEPGLTERFNLFVNRRELCDAYTELNDPTAQRERFAEQL 528
Query: 714 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRL 827
KD+ GD+EAM +DE+F+ A+E G+PPT G G+GIDRL
Sbjct: 529 KDRQLGDDEAMDLDESFITALEYGLPPTGGLGMGIDRL 566
>sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 264 bits (674), Expect = 3e-70
Identities = 139/280 (49%), Positives = 183/280 (65%), Gaps = 5/280 (1%)
Frame = +3
Query: 3 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 182
GA A+PF TYHN ++YLRIAPEL+LK LI+GG RV+EIGK FRNESVD THNPEFT
Sbjct: 303 GANARPFVTYHNFLETELYLRIAPELYLKRLIVGGFPRVYEIGKNFRNESVDRTHNPEFT 362
Query: 183 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDGKTYEIDFKPPYQRIDMMTG 362
EFY A+ DY DLI TED+ L+++ G VKY + +E+DF PP++++
Sbjct: 363 MVEFYAAYWDYHDLIKFTEDMFVYLLEKTLGTLKVKYGE----WELDFSPPFKKVRYFDL 418
Query: 363 LEEALKMKLPLPTELGTEESRLILD-----KICADNNVECSAPRTTARLLDKLVGEYLEE 527
L+E + G ++ + D K+ + + T A+LLDK+ + EE
Sbjct: 419 LKE----------KTGKDKDFFLKDLEGLRKLAKELEIPDVERMTHAKLLDKVFEKVAEE 468
Query: 528 KCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQ 707
I PTF+++ P+I+SPLAK HR P L ERFEL + + E+ NAYTELNDP Q+ERF +
Sbjct: 469 DLIQPTFVIDFPKILSPLAKTHREDPDLVERFELIIARYEVANAYTELNDPFDQKERFLE 528
Query: 708 QAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRL 827
Q K+K GDEEAM +DE F+ A+E GMPPTAG G+GIDRL
Sbjct: 529 QLKEKQMGDEEAMDMDEDFIRALEYGMPPTAGEGIGIDRL 568
>sp|Q8KCM7|SYK_CHLTE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 511
Score = 256 bits (655), Expect = 4e-68
Identities = 133/278 (47%), Positives = 184/278 (66%), Gaps = 3/278 (1%)
Frame = +3
Query: 3 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 182
GAAA+PF T+HN +M +YLRIA EL+LK LI+GG + VFE K FRNE +D HNPEFT
Sbjct: 226 GAAARPFTTHHNALDMQLYLRIANELYLKRLIVGGFDGVFEFAKDFRNEGIDRFHNPEFT 285
Query: 183 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDGKTY---EIDFKPPYQRIDM 353
E Y+A+ DY ++ + EDLL E+ G KD + EI+ KPP++R+ +
Sbjct: 286 QVELYVAYKDYIWMMELVEDLLHKACVEVNG-------KDSTMFLGNEINLKPPFRRLTI 338
Query: 354 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 533
+ E M++ G E++L I D +E ++ +++D++ GE++E K
Sbjct: 339 ADSIREYTGMEIR-----GKSEAQL--RDIAKDLGLELDPKISSGKIIDEIFGEFVEPKL 391
Query: 534 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 713
I PTFI ++PE MSPLAK HR+ PGL ERFEL V KE+CN+++ELNDP++QRER E+QA
Sbjct: 392 IQPTFITDYPEEMSPLAKKHRSEPGLVERFELIVGGKEVCNSFSELNDPVIQRERLEEQA 451
Query: 714 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRL 827
+ + GD+EAM VDE FL A+E GMPP AG G+GIDR+
Sbjct: 452 RLRQRGDDEAMIVDEDFLRALEYGMPPCAGLGIGIDRM 489
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,493,003
Number of Sequences: 369166
Number of extensions: 2137474
Number of successful extensions: 6600
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6386
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)