Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_A24
(753 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor 289 5e-78
sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor 286 3e-77
sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor 286 4e-77
sp|P23007|CISY_CHICK Citrate synthase, mitochondrial 280 2e-75
sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial pre... 278 1e-74
sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondri... 276 6e-74
sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial pre... 274 2e-73
sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor 272 6e-73
sp|P49298|CISY_CITMA Citrate synthase, mitochondrial precursor 270 2e-72
sp|P34085|CISY_NEUCR Citrate synthase, mitochondrial precursor 268 9e-72
>sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor
Length = 464
Score = 289 bits (740), Expect = 5e-78
Identities = 139/192 (72%), Positives = 166/192 (86%)
Frame = +1
Query: 1 VSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIV 180
VSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W+ ++ + +G +D+ +
Sbjct: 270 VSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLR 329
Query: 181 EFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLG 360
++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+QLY+IVP+VL
Sbjct: 330 DYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLL 389
Query: 361 KKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERP 540
++ K NP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERP
Sbjct: 390 EQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERP 449
Query: 541 KSFSTDKLIELV 576
KS STD LI+LV
Sbjct: 450 KSMSTDGLIKLV 461
>sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor
Length = 466
Score = 286 bits (733), Expect = 3e-77
Identities = 139/197 (70%), Positives = 169/197 (85%), Gaps = 1/197 (0%)
Frame = +1
Query: 1 VSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIV 180
VSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W+ ++ + +G +D+ +
Sbjct: 270 VSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLR 329
Query: 181 EFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLG 360
++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP+ P+FK+V+QLY+IVP+VL
Sbjct: 330 DYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLL 389
Query: 361 KKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERP 540
++ K NP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERP
Sbjct: 390 EQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERP 449
Query: 541 KSFSTDKLIELV-RKSG 588
KS ST+ L++ V KSG
Sbjct: 450 KSMSTEGLMKFVDSKSG 466
>sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor
Length = 464
Score = 286 bits (732), Expect = 4e-77
Identities = 136/192 (70%), Positives = 165/192 (85%)
Frame = +1
Query: 1 VSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIV 180
VSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W+ ++ + +G +D+ +
Sbjct: 270 VSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLR 329
Query: 181 EFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLG 360
++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+QLY+IVP++L
Sbjct: 330 DYIWNTLNSGRVVPGYGHAVLRKTDPRYSCQREFALKHLPKDPMFKLVAQLYKIVPNILL 389
Query: 361 KKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERP 540
++ K NP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERP
Sbjct: 390 EQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERP 449
Query: 541 KSFSTDKLIELV 576
KS STD L++ V
Sbjct: 450 KSMSTDGLMKFV 461
>sp|P23007|CISY_CHICK Citrate synthase, mitochondrial
Length = 433
Score = 280 bits (717), Expect = 2e-75
Identities = 137/191 (71%), Positives = 159/191 (83%)
Frame = +1
Query: 1 VSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIV 180
VSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL W+ ++ + D +
Sbjct: 243 VSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAXXXAGADASLR 302
Query: 181 EFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLG 360
++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+QLY+IVP+VL
Sbjct: 303 DYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLL 362
Query: 361 KKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERP 540
++ ANP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERP
Sbjct: 363 EQGAAANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERP 422
Query: 541 KSFSTDKLIEL 573
KS STD LI L
Sbjct: 423 KSMSTDGLIAL 433
>sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial precursor
Length = 433
Score = 278 bits (711), Expect = 1e-74
Identities = 131/193 (67%), Positives = 160/193 (82%)
Frame = +1
Query: 1 VSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIV 180
VSAH HLVGSALSDPYLS+AAA+ GLAGPLHGLANQEVLLW++ ++E G + + +
Sbjct: 238 VSAHAGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKLVVEECGESISKEQLK 297
Query: 181 EFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLG 360
+++ KTL +G+VVPGYGH VLRKTDPRY+CQREFALKHLPD PLF++VS+LY++VP +L
Sbjct: 298 DYVWKTLNSGKVVPGYGHGVLRKTDPRYICQREFALKHLPDDPLFQLVSKLYEVVPPILT 357
Query: 361 KKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERP 540
+ K+ NP+PNVDAHSGVLL YYG+TE YYTVLFG+SR+LGI S LIWDRALGLP+ERP
Sbjct: 358 ELGKVKNPWPNVDAHSGVLLNYYGLTEARYYTVLFGVSRSLGICSQLIWDRALGLPLERP 417
Query: 541 KSFSTDKLIELVR 579
KS + D L R
Sbjct: 418 KSVNMDWLDNFTR 430
>sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondrial precursor
Length = 468
Score = 276 bits (705), Expect = 6e-74
Identities = 134/191 (70%), Positives = 162/191 (84%)
Frame = +1
Query: 1 VSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIV 180
VSAHT HLVGSALSDPYLS++AAM GLAGPLHGLANQEVL+++ K++ IG T++ +
Sbjct: 272 VSAHTSHLVGSALSDPYLSFSAAMAGLAGPLHGLANQEVLVFLNKIVGEIGFNYTEEQLK 331
Query: 181 EFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLG 360
E++ K LK+GQVVPGYGHAVLRKTDPRY CQREFALKHLP+ LFK+VS LY+I P +L
Sbjct: 332 EWVWKHLKSGQVVPGYGHAVLRKTDPRYECQREFALKHLPNDDLFKLVSTLYKITPGILL 391
Query: 361 KKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERP 540
++ K NP+PNVD+HSGVLLQY+GMTE ++YTVLFG+SRALG LS LIW R +GLP+ERP
Sbjct: 392 EQGKAKNPWPNVDSHSGVLLQYFGMTEMSFYTVLFGVSRALGCLSQLIWARGMGLPLERP 451
Query: 541 KSFSTDKLIEL 573
KS STD LI+L
Sbjct: 452 KSHSTDGLIKL 462
>sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial precursor
Length = 474
Score = 274 bits (700), Expect = 2e-73
Identities = 129/188 (68%), Positives = 158/188 (84%)
Frame = +1
Query: 1 VSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIV 180
VSAHT HLVGSALSDPYLS+AAA+ GLAGPLHGLANQEVLLW++ ++E G + + +
Sbjct: 277 VSAHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVEECGEDISKEQLK 336
Query: 181 EFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLG 360
E++ KTL +G+V+PGYGH VLR TDPRY+CQREFALKHLPD PLF++VS+LY++VP VL
Sbjct: 337 EYVWKTLNSGKVIPGYGHGVLRNTDPRYVCQREFALKHLPDDPLFQLVSKLYEVVPPVLT 396
Query: 361 KKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERP 540
+ K+ NP+PNVDAHSGVLL +YG+TE YYTVLFG+SR+LGI S LIWDRALGL +ERP
Sbjct: 397 ELGKVKNPWPNVDAHSGVLLNHYGLTEARYYTVLFGVSRSLGICSQLIWDRALGLALERP 456
Query: 541 KSFSTDKL 564
KS + D L
Sbjct: 457 KSVTMDWL 464
>sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor
Length = 472
Score = 272 bits (696), Expect = 6e-73
Identities = 128/195 (65%), Positives = 159/195 (81%)
Frame = +1
Query: 1 VSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIV 180
VSAHT HLV SALSDPYLS+AAA+ GLAGPLHGLANQEVLLW++ ++ G T + +
Sbjct: 277 VSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVSECGENVTKEQLK 336
Query: 181 EFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLG 360
++I KTL +G+VVPGYGH VLR TDPRY+CQREFALKHLPD PLF++VS L+++VP +L
Sbjct: 337 DYIWKTLNSGKVVPGYGHGVLRNTDPRYICQREFALKHLPDDPLFQLVSNLFEVVPPILT 396
Query: 361 KKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERP 540
+ K+ NP+PNVDAHSGVLL +YG+TE YYTVLFG+SRA+GI S L+WDRALGLP+ERP
Sbjct: 397 ELGKVKNPWPNVDAHSGVLLNHYGLTEARYYTVLFGVSRAIGICSQLVWDRALGLPLERP 456
Query: 541 KSFSTDKLIELVRKS 585
KS + + L +KS
Sbjct: 457 KSVTMEWLENHCKKS 471
>sp|P49298|CISY_CITMA Citrate synthase, mitochondrial precursor
Length = 471
Score = 270 bits (691), Expect = 2e-72
Identities = 126/195 (64%), Positives = 160/195 (82%)
Frame = +1
Query: 1 VSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIV 180
VSAHT HLV SALSDPYLS+ AA+ GLAGPLHGLANQEVLLW++ +++ G T + +
Sbjct: 276 VSAHTGHLVASALSDPYLSFLAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLK 335
Query: 181 EFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLG 360
+++ KTL +G+VVPG+GH VLRKTDPRY CQREFALKHLPD PLF++VS+LY++VP +L
Sbjct: 336 DYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLYEVVPPILT 395
Query: 361 KKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERP 540
K K+ NP+PNVDAHSGVLL ++G+ E YYTVLFG+SR+LGI S LIWDRALGLP+ERP
Sbjct: 396 KLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERP 455
Query: 541 KSFSTDKLIELVRKS 585
KS + D + + +K+
Sbjct: 456 KSVTLDWIEKNCKKA 470
>sp|P34085|CISY_NEUCR Citrate synthase, mitochondrial precursor
Length = 469
Score = 268 bits (686), Expect = 9e-72
Identities = 130/194 (67%), Positives = 160/194 (82%)
Frame = +1
Query: 1 VSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIV 180
VSAHT HLVGSALS P+LS AA + GLAGPLHGLANQEVL W+ +M +VIG +D+ I
Sbjct: 275 VSAHTTHLVGSALSSPFLSVAAGLNGLAGPLHGLANQEVLNWLTEMKKVIGDDLSDEAIT 334
Query: 181 EFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLG 360
+++ TL AG+VVPGYGHAVLRKTDPRY QR+FA +HLP+ P+F++VSQ+Y+I P VL
Sbjct: 335 KYLWDTLNAGRVVPGYGHAVLRKTDPRYSAQRKFAQEHLPEDPMFQLVSQVYKIAPKVLT 394
Query: 361 KKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERP 540
+ K NP+PNVDAHSGVLLQ+YG+TE NYYTVLFG+SRA+G+L LI DRA+G PIERP
Sbjct: 395 EHGKTKNPYPNVDAHSGVLLQHYGLTEANYYTVLFGVSRAIGVLPQLIIDRAVGAPIERP 454
Query: 541 KSFSTDKLIELVRK 582
KS+STDK IE+ +K
Sbjct: 455 KSYSTDKWIEICKK 468
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,237,263
Number of Sequences: 369166
Number of extensions: 1798395
Number of successful extensions: 5243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5147
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)