Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_A11
(586 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 225 7e-59
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 224 2e-58
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 224 2e-58
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 224 2e-58
sp|Q92005|EF1A_BRARE Elongation factor 1-alpha (EF-1-alpha) 222 5e-58
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 222 5e-58
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 222 5e-58
sp|P16017|EF1A_CANAL Elongation factor 1-alpha (EF-1-alpha) 222 6e-58
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 222 6e-58
sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha) 221 1e-57
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 225 bits (573), Expect = 7e-59
Identities = 115/195 (58%), Positives = 139/195 (71%), Gaps = 2/195 (1%)
Frame = +3
Query: 6 KEVSSYLKKVGYQPDGVAFVPISGWNGDNMIEESSNMSWYKGWDITRKNAKKEETKITGK 185
KEVS+Y+KK+GY PD VAFVPISGWNGDNM+E SSNM W+KGW +TRK+ +G
Sbjct: 172 KEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKDGNA-----SGT 226
Query: 186 TLLDALDSLEPPSRPIINHFDYLYRMFTK*--VECTVCWAC*NWYFKTRMVVTFAPQGLT 359
TLL+ALD + PP+RP + K + K MVVTFAP +T
Sbjct: 227 TLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVT 286
Query: 360 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVII 539
TEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII
Sbjct: 287 TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVII 346
Query: 540 MNHPGEIHSGYSPVL 584
+NHPG+I +GY+PVL
Sbjct: 347 LNHPGQISAGYAPVL 361
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 224 bits (570), Expect = 2e-58
Identities = 117/195 (60%), Positives = 138/195 (70%), Gaps = 2/195 (1%)
Frame = +3
Query: 6 KEVSSYLKKVGYQPDGVAFVPISGWNGDNMIEESSNMSWYKGWDITRKNAKKEETKITGK 185
KEVS+Y+KK+GY PD VAFVPISGWNGDNM+E S NM W+KGW ITRK E +G
Sbjct: 172 KEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSPNMPWFKGWKITRK-----EGSGSGT 226
Query: 186 TLLDALDSLEPPSRPIINHFDYLYRMFTK*--VECTVCWAC*NWYFKTRMVVTFAPQGLT 359
TLL+ALD + PPSRP + K + K MVVTFAP +T
Sbjct: 227 TLLEALDCILPPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPVNVT 286
Query: 360 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVII 539
TEVKSVEMHHEALTEA+PGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII
Sbjct: 287 TEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVII 346
Query: 540 MNHPGEIHSGYSPVL 584
+NHPG+I +GY+PVL
Sbjct: 347 LNHPGQIGAGYAPVL 361
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 224 bits (570), Expect = 2e-58
Identities = 114/195 (58%), Positives = 139/195 (71%), Gaps = 2/195 (1%)
Frame = +3
Query: 6 KEVSSYLKKVGYQPDGVAFVPISGWNGDNMIEESSNMSWYKGWDITRKNAKKEETKITGK 185
KEVS+Y+KK+GY PD VAFVPISGWNGDNM+E S+NM W+KGW +TRK+ +G
Sbjct: 172 KEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGSA-----SGT 226
Query: 186 TLLDALDSLEPPSRPIINHFDYLYRMFTK*--VECTVCWAC*NWYFKTRMVVTFAPQGLT 359
TLL+ALD + PP+RP + K + K MVVTFAP +T
Sbjct: 227 TLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVT 286
Query: 360 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVII 539
TEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII
Sbjct: 287 TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVII 346
Query: 540 MNHPGEIHSGYSPVL 584
+NHPG+I +GY+PVL
Sbjct: 347 LNHPGQISAGYAPVL 361
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 224 bits (570), Expect = 2e-58
Identities = 114/195 (58%), Positives = 139/195 (71%), Gaps = 2/195 (1%)
Frame = +3
Query: 6 KEVSSYLKKVGYQPDGVAFVPISGWNGDNMIEESSNMSWYKGWDITRKNAKKEETKITGK 185
KEVS+Y+KK+GY PD VAFVPISGWNGDNM+E S+NM W+KGW +TRK+ +G
Sbjct: 172 KEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNA-----SGT 226
Query: 186 TLLDALDSLEPPSRPIINHFDYLYRMFTK*--VECTVCWAC*NWYFKTRMVVTFAPQGLT 359
TLL+ALD + PP+RP + K + K MVVTFAP +T
Sbjct: 227 TLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVT 286
Query: 360 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVII 539
TEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII
Sbjct: 287 TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVII 346
Query: 540 MNHPGEIHSGYSPVL 584
+NHPG+I +GY+PVL
Sbjct: 347 LNHPGQISAGYAPVL 361
>sp|Q92005|EF1A_BRARE Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 222 bits (566), Expect = 5e-58
Identities = 116/195 (59%), Positives = 137/195 (70%), Gaps = 2/195 (1%)
Frame = +3
Query: 6 KEVSSYLKKVGYQPDGVAFVPISGWNGDNMIEESSNMSWYKGWDITRKNAKKEETKITGK 185
KEVS+Y+KK+GY P VAFVPISGW+GDNM+E SSNM W+KGW I RK E +G
Sbjct: 172 KEVSAYIKKIGYNPASVAFVPISGWHGDNMLEASSNMGWFKGWKIERK-----EGNASGT 226
Query: 186 TLLDALDSLEPPSRPIINHFDYLYRMFTK*--VECTVCWAC*NWYFKTRMVVTFAPQGLT 359
TLLDALD++ PPSRP + K + K MVVTFAP +T
Sbjct: 227 TLLDALDAILPPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPANVT 286
Query: 360 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVII 539
TEVKSVEMHHE+LTEA PGDNVGFN+KNVSVK+IRRGNV DSK+DP +A +F AQVII
Sbjct: 287 TEVKSVEMHHESLTEATPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAANFNAQVII 346
Query: 540 MNHPGEIHSGYSPVL 584
+NHPG+I GY+PVL
Sbjct: 347 LNHPGQISQGYAPVL 361
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 222 bits (566), Expect = 5e-58
Identities = 112/195 (57%), Positives = 138/195 (70%), Gaps = 2/195 (1%)
Frame = +3
Query: 6 KEVSSYLKKVGYQPDGVAFVPISGWNGDNMIEESSNMSWYKGWDITRKNAKKEETKITGK 185
KEVS ++KK+G+ P V FVPISGW+GDNM+EES+NM WYKGW+ K K +GK
Sbjct: 170 KEVSGFIKKIGFNPKSVPFVPISGWHGDNMLEESTNMPWYKGWNKETKAGAK-----SGK 224
Query: 186 TLLDALDSLEPPSRPIINHFDYLYRMFTK*--VECTVCWAC*NWYFKTRMVVTFAPQGLT 359
TLLDA+D+++PP RP + K + K MVVTFAP +T
Sbjct: 225 TLLDAIDAIDPPQRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPANVT 284
Query: 360 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVII 539
TEVKSVEMHHE L E LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++A F AQVI+
Sbjct: 285 TEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIV 344
Query: 540 MNHPGEIHSGYSPVL 584
+NHPG+I +GY+PVL
Sbjct: 345 LNHPGQIGAGYAPVL 359
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 222 bits (566), Expect = 5e-58
Identities = 113/195 (57%), Positives = 139/195 (71%), Gaps = 2/195 (1%)
Frame = +3
Query: 6 KEVSSYLKKVGYQPDGVAFVPISGWNGDNMIEESSNMSWYKGWDITRKNAKKEETKITGK 185
KEVS+Y+KK+GY PD VAFVPISGWNGDNM+E S+NM W+KGW +TRK+ +G
Sbjct: 172 KEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNA-----SGT 226
Query: 186 TLLDALDSLEPPSRPIINHFDYLYRMFTK*--VECTVCWAC*NWYFKTRMVVTFAPQGLT 359
TLL+ALD + PP+RP + K + K +VVTFAP +T
Sbjct: 227 TLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGVVVTFAPVNVT 286
Query: 360 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVII 539
TEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII
Sbjct: 287 TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVII 346
Query: 540 MNHPGEIHSGYSPVL 584
+NHPG+I +GY+PVL
Sbjct: 347 LNHPGQISAGYAPVL 361
>sp|P16017|EF1A_CANAL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 222 bits (565), Expect = 6e-58
Identities = 113/195 (57%), Positives = 136/195 (69%), Gaps = 2/195 (1%)
Frame = +3
Query: 6 KEVSSYLKKVGYQPDGVAFVPISGWNGDNMIEESSNMSWYKGWDITRKNAKKEETKITGK 185
KE S+++KKVGY P V FVPISGWNGDNMIE S+N WYKGW+ K+ K +TGK
Sbjct: 170 KETSNFVKKVGYNPKTVPFVPISGWNGDNMIEPSTNCPWYKGWEKETKSGK-----VTGK 224
Query: 186 TLLDALDSLEPPSRPIINHFDYLYRMFTK*--VECTVCWAC*NWYFKTRMVVTFAPQGLT 359
TLL+A+D++EPP+RP + K + K MVVTFAP G+T
Sbjct: 225 TLLEAIDAIEPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFAPAGVT 284
Query: 360 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVII 539
TEVKSVEMHHE L E +PGDNVGFN+KNVSVKEIRRGNVC DSK+DP + F AQVI+
Sbjct: 285 TEVKSVEMHHEQLAEGVPGDNVGFNVKNVSVKEIRRGNVCGDSKNDPPKGCDSFNAQVIV 344
Query: 540 MNHPGEIHSGYSPVL 584
+NHPG+I +GYSPVL
Sbjct: 345 LNHPGQISAGYSPVL 359
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 222 bits (565), Expect = 6e-58
Identities = 113/194 (58%), Positives = 139/194 (71%), Gaps = 2/194 (1%)
Frame = +3
Query: 9 EVSSYLKKVGYQPDGVAFVPISGWNGDNMIEESSNMSWYKGWDITRKNAKKEETKITGKT 188
EVS+Y+KK+GY P + FVPISG+NGDNM+E S+NM W+KGW + RK E +TGKT
Sbjct: 173 EVSNYIKKIGYNPKSIPFVPISGFNGDNMLEPSANMPWFKGWSVERK-----EGTMTGKT 227
Query: 189 LLDALDSLEPPSRPIINHFDYLYRMFTK*--VECTVCWAC*NWYFKTRMVVTFAPQGLTT 362
LL+ALDS+ PP RP + K + K M+VTFAPQ LTT
Sbjct: 228 LLEALDSVVPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMIVTFAPQNLTT 287
Query: 363 EVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVIIM 542
EVKSVEMHHEAL EALPGDNVGFN+KN+S+K+IRRG+V SDSK+DPA++ F AQVIIM
Sbjct: 288 EVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIM 347
Query: 543 NHPGEIHSGYSPVL 584
NHPG+I +GY+PVL
Sbjct: 348 NHPGQISAGYTPVL 361
>sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 221 bits (562), Expect = 1e-57
Identities = 112/196 (57%), Positives = 139/196 (70%), Gaps = 2/196 (1%)
Frame = +3
Query: 3 RKEVSSYLKKVGYQPDGVAFVPISGWNGDNMIEESSNMSWYKGWDITRKNAKKEETKITG 182
+KEVS+Y+KK+GY P VAFVPISGW+GDNM+E S + WYKGW+I RK K + G
Sbjct: 171 KKEVSAYIKKIGYNPAAVAFVPISGWHGDNMLEASDRLPWYKGWNIERKEGKAD-----G 225
Query: 183 KTLLDALDSLEPPSRPIINHFDYLYRMFTK*--VECTVCWAC*NWYFKTRMVVTFAPQGL 356
KTLLDALD++ PPSRP + K + K M+VTFAP +
Sbjct: 226 KTLLDALDAILPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMIVTFAPANI 285
Query: 357 TTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVI 536
TTEVKSVEMHHE+L +A PGDNVGFN+KNVSVKE+RRG V SDSK++PAR + DF AQVI
Sbjct: 286 TTEVKSVEMHHESLEQASPGDNVGFNVKNVSVKELRRGYVASDSKNNPARGSQDFFAQVI 345
Query: 537 IMNHPGEIHSGYSPVL 584
++NHPG+I +GY+PVL
Sbjct: 346 VLNHPGQISNGYTPVL 361
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,236,881
Number of Sequences: 369166
Number of extensions: 1595013
Number of successful extensions: 5027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4614
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)