Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_A08
(875 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y3R5|CU005_HUMAN Protein C21orf5 84 7e-16
sp|Q9Y7B3|DOP1_EMENI Protein dopey 60 1e-08
sp|Q03921|DOP1_YEAST Protein dopey 46 2e-04
sp|Q9Z2C4|MTMR1_MOUSE Myotubularin-related protein 1 30 8.8
sp|Q13613|MTMR1_HUMAN Myotubularin-related protein 1 30 8.8
>sp|Q9Y3R5|CU005_HUMAN Protein C21orf5
Length = 2298
Score = 83.6 bits (205), Expect = 7e-16
Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Frame = -3
Query: 606 ERGNKILEQFTESVEPIYFYTCLWQVMLQAPSVRTYGTAFLLNHFNRRLSTDEQLYFLGN 427
+R + +L + + V FYT LW +L +PS+R + F++ H NR EQ Y LG
Sbjct: 163 DRTDALLLRLSLVVGKEVFYTALWGSVLASPSIRLPASVFVVGHINRDAPGREQKYMLGT 222
Query: 426 SISLMVYFNIIVELSNIFF*LNSLTHILNDQQVLVQRQALDFVLFALSMH----RSQLTV 259
+ L V SL L D VLVQR L+ VLF + ++ +
Sbjct: 223 NHQLTV---------------KSLRASLLDSNVLVQRNNLEIVLFFFPFYTCLDSNERAI 267
Query: 258 P----DREKLCAACLTVLLRRDMSLNRRFYSWLMGTNLDRANLVKYVTVCNS 115
P D ++ +A LLRRDMSLNRR Y+WL+G+++ +V + NS
Sbjct: 268 PLLRSDIVRILSAATQTLLRRDMSLNRRLYAWLLGSDIKGNTVVPESEISNS 319
>sp|Q9Y7B3|DOP1_EMENI Protein dopey
Length = 1858
Score = 59.7 bits (143), Expect = 1e-08
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Frame = -3
Query: 555 YFYTCLWQVMLQAPSVRTYGTAFLLNHF-------NRRLSTDEQLYFLGNSISLMVYFNI 397
YF+ C + + +PS R G LN + +RR S E++ + + V +
Sbjct: 223 YFWQCFFLASITSPS-RRLGILAYLNRYLPKLGVTDRRPSRHEEVDATAMPLEMQVAVDS 281
Query: 396 IVELSNIFF*LNSLTHILNDQQVLVQRQALDFVLFALSMH----RSQLTVPDREKLCAAC 229
++ L + L D+QVLVQR LD ++ L + ++++T D ++L A
Sbjct: 282 VI-LPEPGLLIRCFATGLTDEQVLVQRNFLDLLVTHLPLSSPILQTRITKDDLQRLIVAA 340
Query: 228 LTVLLRRDMSLNRRFYSWLMG 166
V+ RRDMSLNRR ++WL+G
Sbjct: 341 AGVVSRRDMSLNRRLWAWLLG 361
>sp|Q03921|DOP1_YEAST Protein dopey
Length = 1698
Score = 45.8 bits (107), Expect = 2e-04
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Frame = -3
Query: 342 NDQQVLVQRQALDFVLFALSMHRSQLTV----PDREKLCAACLTVLLRRDMSLNRRFYSW 175
++ +L++R LD +L L + L V D++ L +C L +DMSLNRR ++W
Sbjct: 291 DENDILIKRSVLDLLLQRLRLDSPVLNVLITSEDKKLLIMSCCRTTLSKDMSLNRRIWNW 350
Query: 174 LMG------TNLDRANLVKYVTVCNS 115
L+G N + N ++Y T S
Sbjct: 351 LLGPTAGGMLNNNGGNSMEYTTSVKS 376
>sp|Q9Z2C4|MTMR1_MOUSE Myotubularin-related protein 1
Length = 669
Score = 30.0 bits (66), Expect = 8.8
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Frame = -3
Query: 558 IYFYTCLWQVMLQAPSVRTYGTAFL---LNH-----FNRRLSTDEQLYF----LGNSISL 415
+ F C+WQ+ Q PS + FL L+H F L EQ N+ISL
Sbjct: 506 LQFIDCVWQMTRQFPSAFEFNELFLITILDHLYSCLFGTFLCNCEQQRIKEDVYTNTISL 565
Query: 414 MVYFNI-IVELSNIFF*LNSLTHIL 343
Y N + E SN FF +N H+L
Sbjct: 566 WSYINSQLDEFSNPFF-VNYENHVL 589
>sp|Q13613|MTMR1_HUMAN Myotubularin-related protein 1
Length = 665
Score = 30.0 bits (66), Expect = 8.8
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Frame = -3
Query: 558 IYFYTCLWQVMLQAPSVRTYGTAFL---LNH-----FNRRLSTDEQLYF----LGNSISL 415
+ F C+WQ+ Q PS + FL L+H F L EQ F +ISL
Sbjct: 502 LQFVDCVWQMTRQFPSAFEFNELFLITILDHLYSCLFGTFLCNCEQQRFKEDVYTKTISL 561
Query: 414 MVYFNI-IVELSNIFF*LNSLTHIL 343
Y N + E SN FF +N H+L
Sbjct: 562 WSYINSQLDEFSNPFF-VNYENHVL 585
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,822,298
Number of Sequences: 369166
Number of extensions: 1579672
Number of successful extensions: 2934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2930
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)