Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_A07-1
(184 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y5S8|NOX1_HUMAN NADPH oxidase homolog 1 (NOX-1) (NOH-1... 28 6.5
sp|O26979|XERCL_METTH Probable tyrosine recombinase xerC-like 28 6.5
>sp|Q9Y5S8|NOX1_HUMAN NADPH oxidase homolog 1 (NOX-1) (NOH-1) (NADH/NADPH mitogenic
oxidase subunit P65-MOX) (Mitogenic oxidase 1) (MOX1)
Length = 564
Score = 28.1 bits (61), Expect = 6.5
Identities = 8/33 (24%), Positives = 22/33 (66%)
Frame = -2
Query: 114 ISHWIISVYF*IMFHVLYVALNYRYYISILIKY 16
+ +W+++ +F ++F V+++ LN ++ +KY
Sbjct: 1 MGNWVVNHWFSVLFLVVWLGLNVFLFVDAFLKY 33
>sp|O26979|XERCL_METTH Probable tyrosine recombinase xerC-like
Length = 311
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 28 NRNVIAIV*CYVKYMKHDLKIYRNYPMTDSLAETELFKFISSDLFE 165
+R V+ Y++Y+K D K+ +NY ++ + F+F D E
Sbjct: 67 DRRVLRSFKRYIQYLKRDKKVTQNYIYLVTVVVKKFFEFSGIDCLE 112
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,207,435
Number of Sequences: 369166
Number of extensions: 237440
Number of successful extensions: 549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 68,354,980
effective HSP length: 33
effective length of database: 62,258,725
effective search space used: 1680985575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)