Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_A04
(295 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13434|MKRN4_HUMAN Makorin-4 (Zinc finger protein 127-Xp... 29 2.9
sp|P40550|PDR11_YEAST ATP-dependent permease PDR11 29 3.8
sp|O61370|NACH_DROAN Sodium channel protein Nach 28 4.9
sp|P31515|FST_XENLA Follistatin precursor (FS) (Activin-bin... 28 4.9
sp|Q58366|Y956_METJA Hypothetical protein MJ0956 28 6.5
sp|Q90844|FST_CHICK Follistatin precursor (FS) (Activin-bin... 28 8.4
>sp|Q13434|MKRN4_HUMAN Makorin-4 (Zinc finger protein 127-Xp) (ZNF127-Xp) (RING finger
protein 64)
Length = 485
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 39 TCKNIDSEVCGQKYQKHDDNCKNKQDFFWKLCGPVYKVYRDEC 167
TC+ +C K DNC+ D +LCG V K ++ C
Sbjct: 95 TCRYFKYGIC-----KEGDNCRYSHDLSDRLCGVVCKYFQRGC 132
>sp|P40550|PDR11_YEAST ATP-dependent permease PDR11
Length = 1411
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 96 YHHVFDIFDHILLNLCFCRFCPMLYSQF 13
YHHV+ F I+ LCF FC +L +++
Sbjct: 629 YHHVWRNFGIIIGFLCFFLFCSLLAAEY 656
>sp|O61370|NACH_DROAN Sodium channel protein Nach
Length = 516
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 117 NLVCFCNYHHVFDIFDHILLNLCFCRFCPMLYSQFTEII 1
N+V FCN H F F+ +C + P L F II
Sbjct: 333 NMVKFCNCHTYFFDFNRTTDRICTFKDIPCLVDNFANII 371
>sp|P31515|FST_XENLA Follistatin precursor (FS) (Activin-binding protein) (XFS-319)
Length = 341
Score = 28.5 bits (62), Expect = 4.9
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Frame = +3
Query: 36 KTCKNIDSEVCGQKYQKHDDNCKNK---------QDFFWK--LCGPVYKVYRDECA 170
+TC+N+D CG +K N KNK + WK +CG K Y+DECA
Sbjct: 93 ETCENVD---CGPG-KKCKMNKKNKPRCVCAPDCSNITWKGSVCGIDGKTYKDECA 144
>sp|Q58366|Y956_METJA Hypothetical protein MJ0956
Length = 260
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 19/58 (32%)
Frame = -2
Query: 138 DHIISRRNLVCFCNYHHVFDIFDHI-----------------LLNLCF--CRFCPMLY 22
+HI + + +CN +++F F H+ L++ C+ C FCP+LY
Sbjct: 115 EHIKDKERFLTWCNDYNLFPPFIHLNVSRERLVKEFESLDKNLISSCYHACVFCPILY 172
>sp|Q90844|FST_CHICK Follistatin precursor (FS) (Activin-binding protein)
Length = 343
Score = 27.7 bits (60), Expect = 8.4
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Frame = +3
Query: 36 KTCKNIDSEVCGQKYQKHDDNCKNK---------QDFFWK--LCGPVYKVYRDECA 170
+TC+N+D CG +K N KNK + WK +CG K YR+ECA
Sbjct: 92 ETCENVD---CGPG-KKCKMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECA 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,337,853
Number of Sequences: 369166
Number of extensions: 427812
Number of successful extensions: 1294
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 68,354,980
effective HSP length: 67
effective length of database: 55,977,735
effective search space used: 1679332050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)