Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_P21
(644 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5M828|CF105_RAT Protein C6orf105 homolog (Liver regener... 52 1e-06
sp|Q8C138|CF105_MOUSE Protein C6orf105 homolog 52 1e-06
sp|Q9NVV5|AIG1_HUMAN Androgen-induced protein 1 (AIG-1) 46 9e-05
sp|Q9D8B1|AIG1_MOUSE Androgen-induced protein 1 (AIG-1) 45 1e-04
sp|P45564|YFEN_ECOLI Hypothetical protein yfeN 31 2.4
sp|P02381|RMAR_YEAST Mitochondrial ribosomal protein VAR1 30 7.0
sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1 30 7.0
>sp|Q5M828|CF105_RAT Protein C6orf105 homolog (Liver regeneration-related protein
LRRG140)
Length = 230
Score = 52.4 bits (124), Expect = 1e-06
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 45 KFVQCFRSN-FLSVVMTMNWFVTFTFWGLFLYDRELVYPKKLDGIIPSWWNIVAH 206
KF+ FR F ++ ++ FV FW LF YDR LVYPK LD P+W N H
Sbjct: 77 KFITYFRDLLFTTLAFPLSTFVFLVFWSLFHYDRSLVYPKGLDDFFPAWVNHAMH 131
>sp|Q8C138|CF105_MOUSE Protein C6orf105 homolog
Length = 230
Score = 52.0 bits (123), Expect = 1e-06
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 45 KFVQCFRSN-FLSVVMTMNWFVTFTFWGLFLYDRELVYPKKLDGIIPSWWNIVAH 206
KFV FR F ++ ++ FV FW LF YDR LVYPK LD P+W N H
Sbjct: 77 KFVTSFRDLLFTTMAFPISTFVFLVFWTLFHYDRSLVYPKGLDDFFPAWVNHAMH 131
>sp|Q9NVV5|AIG1_HUMAN Androgen-induced protein 1 (AIG-1)
Length = 245
Score = 45.8 bits (107), Expect = 9e-05
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +3
Query: 102 FVTFTFWGLFLYDRELVYPKKLDGIIPSWWNIVAH 206
FV FW ++ YDRE++YPK LD IP W N H
Sbjct: 100 FVVAVFWIIYAYDREMIYPKLLDNFIPGWLNHGMH 134
>sp|Q9D8B1|AIG1_MOUSE Androgen-induced protein 1 (AIG-1)
Length = 262
Score = 45.4 bits (106), Expect = 1e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 102 FVTFTFWGLFLYDRELVYPKKLDGIIPSWWNIVAH 206
FV FW ++ YDRE++YP+ LD IP W N H
Sbjct: 100 FVVAVFWTIYAYDREMIYPRLLDNFIPGWLNHGMH 134
>sp|P45564|YFEN_ECOLI Hypothetical protein yfeN
Length = 254
Score = 31.2 bits (69), Expect = 2.4
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +3
Query: 108 TFTFWGLFLYDRELVYP------KKLDGIIPSWWNIVAHVVNAL 221
T T W + +DR+ Y + L+G + WWN +H+ +
Sbjct: 185 TLTNWNEYEFDRDATYAAGNGGKEGLNGAVALWWNATSHITTGI 228
>sp|P02381|RMAR_YEAST Mitochondrial ribosomal protein VAR1
Length = 404
Score = 29.6 bits (65), Expect = 7.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 190 HQLGIIPSNFLGYTNSRSYKNNPQNVKVTNQFI 92
++L IPSN Y NS KN N+KV FI
Sbjct: 372 YKLNYIPSNHNLYNNSNINKNGKYNIKVKLNFI 404
>sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1
Length = 373
Score = 29.6 bits (65), Expect = 7.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 190 HQLGIIPSNFLGYTNSRSYKNNPQNVKVTNQFI 92
++L IPSN Y NS KN N+KV FI
Sbjct: 341 YKLNYIPSNHNLYNNSNINKNGKYNIKVKLNFI 373
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,869,057
Number of Sequences: 369166
Number of extensions: 1155281
Number of successful extensions: 3191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3189
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)