Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_P14
(446 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 242 2e-64
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 242 3e-64
sp|P16017|EF1A_CANAL Elongation factor 1-alpha (EF-1-alpha) 242 3e-64
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 242 3e-64
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 240 9e-64
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 239 2e-63
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 238 4e-63
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 238 6e-63
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 238 6e-63
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 237 8e-63
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 242 bits (618), Expect = 2e-64
Identities = 115/147 (78%), Positives = 130/147 (88%)
Frame = +3
Query: 6 VAFVPISGWNGDNMIEESTNMPWYKGWEITRKNAKKEEIKTSGKTLLDALDSLEPPTRPT 185
VAFVPISGWNGDNM+E S+NMPW+KGW++TRK+ SG TLL+ALD + PPTRPT
Sbjct: 188 VAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKDGN-----ASGTTLLEALDCILPPTRPT 242
Query: 186 NKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEA 365
+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EA
Sbjct: 243 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEA 302
Query: 366 LPGDNVGFNIKNVSVTEIRRGNVCSDS 446
LPGDNVGFN+KNVSV ++RRGNV DS
Sbjct: 303 LPGDNVGFNVKNVSVKDVRRGNVAGDS 329
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 242 bits (617), Expect = 3e-64
Identities = 115/147 (78%), Positives = 129/147 (87%)
Frame = +3
Query: 6 VAFVPISGWNGDNMIEESTNMPWYKGWEITRKNAKKEEIKTSGKTLLDALDSLEPPTRPT 185
VAFVPISGWNGDNM+E S NMPW+KGW++TRK+ SG TLL+ALD + PPTRPT
Sbjct: 188 VAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGS-----ASGTTLLEALDCILPPTRPT 242
Query: 186 NKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEA 365
+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EA
Sbjct: 243 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEA 302
Query: 366 LPGDNVGFNIKNVSVTEIRRGNVCSDS 446
LPGDNVGFN+KNVSV ++RRGNV DS
Sbjct: 303 LPGDNVGFNVKNVSVKDVRRGNVAGDS 329
>sp|P16017|EF1A_CANAL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 242 bits (617), Expect = 3e-64
Identities = 116/147 (78%), Positives = 127/147 (86%)
Frame = +3
Query: 6 VAFVPISGWNGDNMIEESTNMPWYKGWEITRKNAKKEEIKTSGKTLLDALDSLEPPTRPT 185
V FVPISGWNGDNMIE STN PWYKGWE K+ K +GKTLL+A+D++EPPTRPT
Sbjct: 186 VPFVPISGWNGDNMIEPSTNCPWYKGWEKETKSGK-----VTGKTLLEAIDAIEPPTRPT 240
Query: 186 NKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEA 365
+KPLRLPLQDVYKIGGIGTVPVGRVETGI+K GMVVTFAP G+TTEVKSVEMHHE L E
Sbjct: 241 DKPLRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFAPAGVTTEVKSVEMHHEQLAEG 300
Query: 366 LPGDNVGFNIKNVSVTEIRRGNVCSDS 446
+PGDNVGFN+KNVSV EIRRGNVC DS
Sbjct: 301 VPGDNVGFNVKNVSVKEIRRGNVCGDS 327
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 242 bits (617), Expect = 3e-64
Identities = 115/147 (78%), Positives = 129/147 (87%)
Frame = +3
Query: 6 VAFVPISGWNGDNMIEESTNMPWYKGWEITRKNAKKEEIKTSGKTLLDALDSLEPPTRPT 185
VAFVPISGWNGDNM+E S NMPW+KGW++TRK+ SG TLL+ALD + PPTRPT
Sbjct: 188 VAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGN-----ASGTTLLEALDCILPPTRPT 242
Query: 186 NKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEA 365
+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EA
Sbjct: 243 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEA 302
Query: 366 LPGDNVGFNIKNVSVTEIRRGNVCSDS 446
LPGDNVGFN+KNVSV ++RRGNV DS
Sbjct: 303 LPGDNVGFNVKNVSVKDVRRGNVAGDS 329
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 240 bits (613), Expect = 9e-64
Identities = 114/147 (77%), Positives = 129/147 (87%)
Frame = +3
Query: 6 VAFVPISGWNGDNMIEESTNMPWYKGWEITRKNAKKEEIKTSGKTLLDALDSLEPPTRPT 185
VAFVPISGWNGDNM+E S NMPW+KGW++TRK+ SG TLL+ALD + PPTRPT
Sbjct: 188 VAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGN-----ASGTTLLEALDCILPPTRPT 242
Query: 186 NKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEA 365
+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPG+VVTFAP +TTEVKSVEMHHEAL+EA
Sbjct: 243 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGVVVTFAPVNVTTEVKSVEMHHEALSEA 302
Query: 366 LPGDNVGFNIKNVSVTEIRRGNVCSDS 446
LPGDNVGFN+KNVSV ++RRGNV DS
Sbjct: 303 LPGDNVGFNVKNVSVKDVRRGNVAGDS 329
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 239 bits (610), Expect = 2e-63
Identities = 115/147 (78%), Positives = 129/147 (87%)
Frame = +3
Query: 6 VAFVPISGWNGDNMIEESTNMPWYKGWEITRKNAKKEEIKTSGKTLLDALDSLEPPTRPT 185
VAFVPISGWNGDNM+E S NMPW+KGW+ITRK E SG TLL+ALD + PP+RPT
Sbjct: 188 VAFVPISGWNGDNMLEPSPNMPWFKGWKITRK-----EGSGSGTTLLEALDCILPPSRPT 242
Query: 186 NKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEA 365
+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTFAP +TTEVKSVEMHHEALTEA
Sbjct: 243 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPVNVTTEVKSVEMHHEALTEA 302
Query: 366 LPGDNVGFNIKNVSVTEIRRGNVCSDS 446
+PGDNVGFN+KNVSV ++RRGNV DS
Sbjct: 303 VPGDNVGFNVKNVSVKDVRRGNVAGDS 329
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 238 bits (607), Expect = 4e-63
Identities = 115/148 (77%), Positives = 131/148 (88%)
Frame = +3
Query: 3 AVAFVPISGWNGDNMIEESTNMPWYKGWEITRKNAKKEEIKTSGKTLLDALDSLEPPTRP 182
AV FVPISG+NGDNM+E S+NMPW+KGW + RK E SGKTLL+ALDS+ PP RP
Sbjct: 187 AVPFVPISGFNGDNMLEVSSNMPWFKGWAVERK-----EGNASGKTLLEALDSIIPPQRP 241
Query: 183 TNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTE 362
T++PLRLPLQDVYKIGGIGTVPVGRVETGI+KPGMVVTFAPQ +TTEVKSVEMHHE+L E
Sbjct: 242 TDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPE 301
Query: 363 ALPGDNVGFNIKNVSVTEIRRGNVCSDS 446
A+PGDNVGFN+KNVSV +IRRG+VCSDS
Sbjct: 302 AVPGDNVGFNVKNVSVKDIRRGSVCSDS 329
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 238 bits (606), Expect = 6e-63
Identities = 114/147 (77%), Positives = 129/147 (87%)
Frame = +3
Query: 6 VAFVPISGWNGDNMIEESTNMPWYKGWEITRKNAKKEEIKTSGKTLLDALDSLEPPTRPT 185
V FVPISGW+GDNM+E S NMPW+KGW++ RK E SG +LL+ALD++ PPTRPT
Sbjct: 188 VPFVPISGWHGDNMLEPSPNMPWFKGWKVERK-----EGNASGVSLLEALDTILPPTRPT 242
Query: 186 NKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEA 365
+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP +TTEVKSVEMHHEAL+EA
Sbjct: 243 DKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEA 302
Query: 366 LPGDNVGFNIKNVSVTEIRRGNVCSDS 446
LPGDNVGFN+KNVSV +IRRGNVC DS
Sbjct: 303 LPGDNVGFNVKNVSVKDIRRGNVCGDS 329
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 238 bits (606), Expect = 6e-63
Identities = 114/147 (77%), Positives = 129/147 (87%)
Frame = +3
Query: 6 VAFVPISGWNGDNMIEESTNMPWYKGWEITRKNAKKEEIKTSGKTLLDALDSLEPPTRPT 185
V FVPISGW+GDNM+E S NMPW+KGW++ RK E SG +LL+ALD++ PPTRPT
Sbjct: 188 VPFVPISGWHGDNMLEPSPNMPWFKGWKVERK-----EGNASGVSLLEALDTILPPTRPT 242
Query: 186 NKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEA 365
+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP +TTEVKSVEMHHEAL+EA
Sbjct: 243 DKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEA 302
Query: 366 LPGDNVGFNIKNVSVTEIRRGNVCSDS 446
LPGDNVGFN+KNVSV +IRRGNVC DS
Sbjct: 303 LPGDNVGFNVKNVSVKDIRRGNVCGDS 329
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 237 bits (605), Expect = 8e-63
Identities = 113/148 (76%), Positives = 127/148 (85%)
Frame = +3
Query: 3 AVAFVPISGWNGDNMIEESTNMPWYKGWEITRKNAKKEEIKTSGKTLLDALDSLEPPTRP 182
+V FVPISGW+GDNM+EESTNMPWYKGW K K SGKTLLDA+D+++PP RP
Sbjct: 185 SVPFVPISGWHGDNMLEESTNMPWYKGWNKETKAGAK-----SGKTLLDAIDAIDPPQRP 239
Query: 183 TNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTE 362
++KPLRLPLQDVYKIGGIGTVPVGRVETG++K GMVVTFAP +TTEVKSVEMHHE L E
Sbjct: 240 SDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPANVTTEVKSVEMHHEQLVE 299
Query: 363 ALPGDNVGFNIKNVSVTEIRRGNVCSDS 446
LPGDNVGFN+KNVSV +IRRGNVCSDS
Sbjct: 300 GLPGDNVGFNVKNVSVKDIRRGNVCSDS 327
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,757,730
Number of Sequences: 369166
Number of extensions: 1010160
Number of successful extensions: 4116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3809
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2394311040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)