Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_P12
(649 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATP... 309 5e-84
sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-... 305 5e-83
sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATP... 298 8e-81
sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATP... 298 8e-81
sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATP... 233 3e-61
sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subuni... 211 1e-54
sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subuni... 211 1e-54
sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATP... 211 1e-54
sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATP... 207 2e-53
sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subuni... 165 8e-41
>sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 40 kDa subunit) (M40)
Length = 348
Score = 309 bits (791), Expect = 5e-84
Identities = 144/194 (74%), Positives = 173/194 (89%), Gaps = 1/194 (0%)
Frame = +3
Query: 3 DTPLAPYFIDCISEQDLGEFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEA 182
DTPLAP+F+DCISEQDL E +IEIIRNTLY+AY+E FY+FCK +GG TA++MCEILAFEA
Sbjct: 154 DTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKQIGGTTADVMCEILAFEA 213
Query: 183 DRRSFIITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKA 362
DRR+ IITINSF TELSK+DRA LYP+CG+L P+GL+ LARADDYEQVKAVA+YY+EY A
Sbjct: 214 DRRAIIITINSFGTELSKDDRAKLYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSA 273
Query: 363 IFEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECV 539
+FEG G DK+LEDKFFEHEV +NV++F+QQF+F VFYS +KLKEQE RNIVWI+ECV
Sbjct: 274 LFEGAGNNVGDKTLEDKFFEHEVNLNVHAFLQQFHFGVFYSYLKLKEQECRNIVWISECV 333
Query: 540 SQRHRAKIDSYINI 581
+Q+HRAKID+YI I
Sbjct: 334 AQKHRAKIDNYIPI 347
>sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1) (Vacuolar
proton pump d subunit 1) (V-ATPase 39 kDa subunit 1)
Length = 350
Score = 305 bits (782), Expect = 5e-83
Identities = 142/194 (73%), Positives = 172/194 (88%), Gaps = 1/194 (0%)
Frame = +3
Query: 3 DTPLAPYFIDCISEQDLGEFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEA 182
DTPLAP+F+DCISEQDL E +IEIIRNTLY+AY+E FY FCK++GG TA++MCEILAFEA
Sbjct: 156 DTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYNFCKNMGGATADVMCEILAFEA 215
Query: 183 DRRSFIITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKA 362
DRR+ IITINSF TELSK+DRA LYP CG++YP+GL+ LARADDYEQVK VA+YY+EY A
Sbjct: 216 DRRAIIITINSFGTELSKDDRAKLYPNCGKMYPDGLAALARADDYEQVKTVAEYYAEYAA 275
Query: 363 IFEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECV 539
+F+G G DK+LEDKFFEHEVK++V +F+QQF+F VFY+ +KLKEQE RNIVWIAECV
Sbjct: 276 LFDGSGNNPGDKTLEDKFFEHEVKLDVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECV 335
Query: 540 SQRHRAKIDSYINI 581
+Q+HRAKID+YI I
Sbjct: 336 AQKHRAKIDNYIPI 349
>sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (Physophilin)
Length = 351
Score = 298 bits (763), Expect = 8e-81
Identities = 143/194 (73%), Positives = 165/194 (85%), Gaps = 1/194 (0%)
Frame = +3
Query: 3 DTPLAPYFIDCISEQDLGEFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEA 182
DTPLA +F DCISEQDL E +IEIIRNTLY+AY+E FY+FC LGG TA+ MC IL FEA
Sbjct: 157 DTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEA 216
Query: 183 DRRSFIITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKA 362
DRR+FIITINSF TELSKEDRA L+P CGRLYPEGL+ LARADDYEQVK VADYY EYK
Sbjct: 217 DRRAFIITINSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKL 276
Query: 363 IFEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECV 539
+FEG G+ DK+LED+FFEHEVK+N +F+ QF+F VFY+ +KLKEQE RNIVWIAEC+
Sbjct: 277 LFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECI 336
Query: 540 SQRHRAKIDSYINI 581
+QRHRAKID+YI I
Sbjct: 337 AQRHRAKIDNYIPI 350
>sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
sp|P61421|VA0D_HUMAN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
Length = 351
Score = 298 bits (763), Expect = 8e-81
Identities = 143/194 (73%), Positives = 165/194 (85%), Gaps = 1/194 (0%)
Frame = +3
Query: 3 DTPLAPYFIDCISEQDLGEFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEA 182
DTPLA +F DCISEQDL E +IEIIRNTLY+AY+E FY+FC LGG TA+ MC IL FEA
Sbjct: 157 DTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEA 216
Query: 183 DRRSFIITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKA 362
DRR+FIITINSF TELSKEDRA L+P CGRLYPEGL+ LARADDYEQVK VADYY EYK
Sbjct: 217 DRRAFIITINSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKL 276
Query: 363 IFEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECV 539
+FEG G+ DK+LED+FFEHEVK+N +F+ QF+F VFY+ +KLKEQE RNIVWIAEC+
Sbjct: 277 LFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECI 336
Query: 540 SQRHRAKIDSYINI 581
+QRHRAKID+YI I
Sbjct: 337 AQRHRAKIDNYIPI 350
>sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa accessory
protein) (DVA41)
Length = 356
Score = 233 bits (594), Expect = 3e-61
Identities = 116/194 (59%), Positives = 143/194 (73%), Gaps = 1/194 (0%)
Frame = +3
Query: 3 DTPLAPYFIDCISEQDLGEFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEA 182
DTPLAPY C+SE+DL E + EIIRNTLY+AY+EDFY +CK LGG T IM +IL FEA
Sbjct: 163 DTPLAPYIQGCLSEEDLDEMNNEIIRNTLYKAYLEDFYNYCKYLGGQTELIMSDILKFEA 222
Query: 183 DRRSFIITINSFD-TELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYK 359
DRRS ITINSF TELSK+DR LYP G LYPEG S L +A+D +QV+ + + YS Y+
Sbjct: 223 DRRSINITINSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYR 282
Query: 360 AIFEGVGTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECV 539
F G N+KSLED FFEHEV +N +F Q+ + VFY+ IKL+EQE+RNIVWIAEC+
Sbjct: 283 NFFSD-GVNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECI 341
Query: 540 SQRHRAKIDSYINI 581
SQ + K++ YI I
Sbjct: 342 SQNMKQKMNQYIPI 355
>sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1)
(Vacuolar proton pump d subunit 1)
Length = 351
Score = 211 bits (538), Expect = 1e-54
Identities = 98/187 (52%), Positives = 140/187 (74%)
Frame = +3
Query: 3 DTPLAPYFIDCISEQDLGEFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEA 182
DTPLAPYF +C++ +DL + +IEI+RNTLY+AY+EDFY+FC+ LGG TAEIM ++LAFEA
Sbjct: 157 DTPLAPYFSECLTSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA 216
Query: 183 DRRSFIITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKA 362
DRR+ ITINS TEL++EDR LY G LYP G LA +D +QV+ V + Y Y+A
Sbjct: 217 DRRAVNITINSIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQA 276
Query: 363 IFEGVGTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVS 542
IF + G + L+ F+E EV+ +F QQF++AVF++ ++L+EQE+RN++WI+ECV+
Sbjct: 277 IFSKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVA 336
Query: 543 QRHRAKI 563
Q +++I
Sbjct: 337 QNQKSRI 343
>sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2)
Length = 351
Score = 211 bits (537), Expect = 1e-54
Identities = 98/187 (52%), Positives = 139/187 (74%)
Frame = +3
Query: 3 DTPLAPYFIDCISEQDLGEFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEA 182
DTPLAPYF +C++ +DL + +IEI+RNTLY+AY+EDFY FC+ LGG TAEIM ++LAFEA
Sbjct: 157 DTPLAPYFSECLTSEDLDDMNIEIMRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEA 216
Query: 183 DRRSFIITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKA 362
DRR+ ITINS TEL++EDR LY G LYP G LA +D +QV+ V + Y Y+A
Sbjct: 217 DRRAVNITINSIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQA 276
Query: 363 IFEGVGTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVS 542
IF + G + L+ F+E EV+ +F QQF++AVF++ ++L+EQE+RN++WI+ECV+
Sbjct: 277 IFSKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVA 336
Query: 543 QRHRAKI 563
Q +++I
Sbjct: 337 QNQKSRI 343
>sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 39 kDa subunit)
(V-ATPase subunit M39)
Length = 343
Score = 211 bits (537), Expect = 1e-54
Identities = 104/194 (53%), Positives = 136/194 (70%)
Frame = +3
Query: 3 DTPLAPYFIDCISEQDLGEFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEA 182
+TPLAPYF DC+S DL E IEIIRNTLY+AY+EDFY FCK +G TA+ M IL FEA
Sbjct: 153 ETPLAPYFKDCLSADDLDEQHIEIIRNTLYKAYLEDFYNFCKKIGACTADTMLPILEFEA 212
Query: 183 DRRSFIITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKA 362
DRR+ ITINSF TELSKE+RA +YP GRLYP S+LARA++ V+ EY
Sbjct: 213 DRRAITITINSFGTELSKEERAKMYPSFGRLYPFSTSILARAENAGDVENACSLVKEYSD 272
Query: 363 IFEGVGTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVS 542
F+ + KSL+D F E EV++N +F+QQF++ + Y+ +KL+EQE+RN+ WIAEC+S
Sbjct: 273 FFD---QNSQKSLDDHFNEKEVELNKLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECIS 329
Query: 543 QRHRAKIDSYINIL 584
Q R + + + IL
Sbjct: 330 QNQRDRALNIVPIL 343
>sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa subunit)
Length = 364
Score = 207 bits (526), Expect = 2e-53
Identities = 102/211 (48%), Positives = 144/211 (68%), Gaps = 18/211 (8%)
Frame = +3
Query: 3 DTPLAPYFIDCISEQDLGEFDIEIIRNTLYRAYIEDFYEFCKS----LGGITAEIMCEIL 170
+TPLAPYF +S QDL E +IEI+RNTLY+ Y+EDFY F + G TAE+M E+L
Sbjct: 153 ETPLAPYFKSSLSLQDLDELNIEIVRNTLYKNYLEDFYHFVNTHPDMAGTPTAEVMSELL 212
Query: 171 AFEADRRSFIITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYS 350
FEADRR+ IT+NSF TELSK DR LYP G+LYPEG ML+RADD+E V+ + +
Sbjct: 213 EFEADRRAINITLNSFGTELSKADRKKLYPNFGQLYPEGTLMLSRADDFEGVRLAVEGVA 272
Query: 351 EYKAIFEGVGTG--------------NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLI 488
+YK+ F+ G G KSLED F++ E++++ +F +QF +A+ Y+ +
Sbjct: 273 DYKSFFDAAGLGGGPSGPGNMGGGGTEGKSLEDMFYQKEMEISKMAFTRQFTYAIVYAWV 332
Query: 489 KLKEQEMRNIVWIAECVSQRHRAKIDSYINI 581
KL+EQE+RNI WIAEC++Q + +I++YI++
Sbjct: 333 KLREQEIRNITWIAECIAQNQKERINNYISV 363
>sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa
subunit 2)
Length = 350
Score = 165 bits (418), Expect = 8e-41
Identities = 77/195 (39%), Positives = 128/195 (65%), Gaps = 2/195 (1%)
Frame = +3
Query: 3 DTPLAPYFIDCISEQDLGEFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEA 182
DTP+A + + + L D+EI+R LYRAY+E FY +C LGG TA +M +L+FEA
Sbjct: 153 DTPIARFVPRDLPMESLRYLDVEIVRAHLYRAYLEKFYAYCSQLGGNTANVMTNLLSFEA 212
Query: 183 DRRSFIITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKA 362
DRR+ I +N+ +++ ++R ++P CG L L+ ++ +D ++++ V + + Y
Sbjct: 213 DRRTITIAVNAIGSDIIPKERLKMFPTCGYLPKIALASMSTLNDTDKIRDVCNVFDGYGK 272
Query: 363 IFEGVGTGNDK--SLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAEC 536
+F+ + +D +LED+F E K NV +F+QQ++F +FYS IKLK+ E+RNIVWI+EC
Sbjct: 273 MFDNLERDSDGMITLEDRFLMMEAKKNVQTFLQQYHFGIFYSFIKLKQLEVRNIVWISEC 332
Query: 537 VSQRHRAKIDSYINI 581
++QR +I+++I I
Sbjct: 333 IAQRQTDRINAFIPI 347
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,898,173
Number of Sequences: 369166
Number of extensions: 1242429
Number of successful extensions: 3318
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3298
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)