Planarian EST Database


Dr_sW_015_P11

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_015_P11
         (826 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18067|RAB7_CANFA  Ras-related protein Rab-7                   303   4e-82
sp|P51150|RAB7_MOUSE  Ras-related protein Rab-7 >gi|1709999|...   302   6e-82
sp|P09527|RAB7_RAT  Ras-related protein Rab-7 (RAS-related p...   302   6e-82
sp|O97572|RAB7_RABIT  Ras-related protein Rab-7                   292   9e-79
sp|P36411|RAB7_DICDI  Ras-related protein Rab7                    274   2e-73
sp|Q9C2L8|RAB7_NEUCR  Probable Ras-related protein Rab7           270   3e-72
sp|O94655|YPT7_SCHPO  Ras-related protein ypt7                    259   6e-69
sp|Q9XER8|RAB7_GOSHI  Ras-related protein Rab7                    254   3e-67
sp|O24461|RAB7_PRUAR  Ras-related protein Rab7                    253   4e-67
sp|P31022|RAB7_PEA  Ras-related protein Rab7                      246   4e-65
>sp|P18067|RAB7_CANFA Ras-related protein Rab-7
          Length = 207

 Score =  303 bits (776), Expect = 4e-82
 Identities = 146/207 (70%), Positives = 168/207 (81%), Gaps = 1/207 (0%)
 Frame = +3

Query: 93  MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 272
           M SR          GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQ
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 273 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 452
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV  PNTFKTLDSWRDEFLIQ+ PRDPE FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 453 VVIGNKVDLESRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDV 632
           VV+GNK+DLE+R V+ +RAQ WC SK +IPYFE SAKEA+NVEQAF  +AR AL QE +V
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 633 DICSDFPTQIHLD-DDQHSNRQNRCGC 710
           ++ ++FP  I LD +D+       C C
Sbjct: 181 ELYNEFPEPIKLDKNDRAKTSAESCSC 207
>sp|P51150|RAB7_MOUSE Ras-related protein Rab-7
 sp|P51149|RAB7_HUMAN Ras-related protein Rab-7
          Length = 207

 Score =  302 bits (774), Expect = 6e-82
 Identities = 146/207 (70%), Positives = 168/207 (81%), Gaps = 1/207 (0%)
 Frame = +3

Query: 93  MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 272
           M SR          GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQ
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 273 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 452
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV  PNTFKTLDSWRDEFLIQ+ PRDPE FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 453 VVIGNKVDLESRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDV 632
           VV+GNK+DLE+R V+ +RAQ WC SK +IPYFE SAKEA+NVEQAF  +AR AL QE +V
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 633 DICSDFPTQIHLD-DDQHSNRQNRCGC 710
           ++ ++FP  I LD +D+       C C
Sbjct: 181 ELYNEFPEPIKLDKNDRAKASAESCSC 207
>sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related protein P23) (RAS-related
           protein BRL-RAS)
          Length = 207

 Score =  302 bits (774), Expect = 6e-82
 Identities = 145/207 (70%), Positives = 168/207 (81%), Gaps = 1/207 (0%)
 Frame = +3

Query: 93  MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 272
           M SR          GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQ
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 273 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 452
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV  PNTFKTLDSWRDEFLIQ+ PRDPE FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 453 VVIGNKVDLESRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDV 632
           VV+GNK+DLE+R V+ +RAQ WC SK +IPYFE SAKEA+NVEQAF  +AR AL QE +V
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 633 DICSDFPTQIHLDDDQHSNRQ-NRCGC 710
           ++ ++FP  I LD ++ +      C C
Sbjct: 181 ELYNEFPEPIKLDKNERAKASAESCSC 207
>sp|O97572|RAB7_RABIT Ras-related protein Rab-7
          Length = 207

 Score =  292 bits (747), Expect = 9e-79
 Identities = 142/207 (68%), Positives = 165/207 (79%), Gaps = 1/207 (0%)
 Frame = +3

Query: 93  MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 272
           M SR          GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQ
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 273 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 452
           IWDTAGQERFQSL VAFYRGADCCVLV+DV  PNTFKTLDSWR EFLIQ+ PRDPE FPF
Sbjct: 61  IWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPF 120

Query: 453 VVIGNKVDLESRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDV 632
           VV+GNK+DLE+R V+ +RAQ W  SK +IPYFE SAKEA+NVEQAF  +AR AL QE +V
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 633 DICSDFPTQIHLD-DDQHSNRQNRCGC 710
           ++ ++FP  + LD +D+       C C
Sbjct: 181 ELYNEFPEPMKLDKNDRAKTSAESCSC 207
>sp|P36411|RAB7_DICDI Ras-related protein Rab7
          Length = 203

 Score =  274 bits (701), Expect = 2e-73
 Identities = 136/205 (66%), Positives = 160/205 (78%), Gaps = 1/205 (0%)
 Frame = +3

Query: 93  MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 272
           MA++          GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK++MVDDRVVTMQ
Sbjct: 1   MATKKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQ 60

Query: 273 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 452
           IWDTAGQERFQSLGVAFYRGADCCVL YDV +  TF+ LDSWRDEFLIQ+GPRDP+ FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPF 120

Query: 453 VVIGNKVDLES-RAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQEND 629
           VV+GNK+DLE+ R VS +RA  WCQSKG+IPYFE SAKEA+NVEQAF  +AR A+  E+ 
Sbjct: 121 VVLGNKIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLED- 179

Query: 630 VDICSDFPTQIHLDDDQHSNRQNRC 704
             +    PT I +  +    +   C
Sbjct: 180 -GLVFPIPTNIQVIPEPQPAKSGCC 203
>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7
          Length = 205

 Score =  270 bits (691), Expect = 3e-72
 Identities = 134/210 (63%), Positives = 160/210 (76%), Gaps = 4/210 (1%)
 Frame = +3

Query: 93  MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 272
           M+SR          GDSGVGKTSLMNQ+VN+KF+  YKATIGADFLT++V+VDDR VTMQ
Sbjct: 1   MSSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVTMQ 60

Query: 273 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 452
           +WDTAGQERFQSLGVAFYRGADCCVLVYDV    +F  LDSWRDEFLIQ+ PRDP+ FPF
Sbjct: 61  LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPF 120

Query: 453 VVIGNKVDLE--SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQEN 626
           VV+GNK+D+E   R +S +RA  +CQSKG+IPYFE SAKEA+NVEQAF  +AR AL QE 
Sbjct: 121 VVLGNKIDMEESKRVISTKRAMTFCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQEE 180

Query: 627 DVDICSDF--PTQIHLDDDQHSNRQNRCGC 710
             +   DF  P  IH+++D     ++ C C
Sbjct: 181 SEEFSGDFQDPINIHIEND-----RDGCAC 205
>sp|O94655|YPT7_SCHPO Ras-related protein ypt7
          Length = 205

 Score =  259 bits (662), Expect = 6e-69
 Identities = 127/208 (61%), Positives = 160/208 (76%), Gaps = 2/208 (0%)
 Frame = +3

Query: 93  MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 272
           MA +          G+SGVGKTS+MNQ+VNRKF+  YKATIGADFLTK+V+VDD+VVT+Q
Sbjct: 1   MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQ 60

Query: 273 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 452
           +WDTAGQERFQSLGVAFYRGADCCVLVYDV    +F+TLDSWRDEFLIQ+ P +PE FPF
Sbjct: 61  LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPF 120

Query: 453 VVIGNKVDLE--SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQEN 626
           +++GNKVD+E   R VS  +A  +CQ++G+IPYFE SAKEA+NV++AF  VA+ AL   +
Sbjct: 121 ILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMD 180

Query: 627 DVDICSDFPTQIHLDDDQHSNRQNRCGC 710
             DI +DF   IHLD +   +++  C C
Sbjct: 181 SDDIAADFTDPIHLDME---SQKTSCYC 205
>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7
          Length = 207

 Score =  254 bits (648), Expect = 3e-67
 Identities = 128/209 (61%), Positives = 152/209 (72%), Gaps = 3/209 (1%)
 Frame = +3

Query: 93  MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 272
           MASR          GDSGVGKTSLMNQ+VNRKF+NQYKATIGADFLTK+V  DDR+ T+Q
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQ 60

Query: 273 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 452
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQ+ P DPE FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 453 VVIGNKVDLE---SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQE 623
           VV+GNKVD++   SR VS ++A+ WC SKG+IPYFE SAKE  NV+ AF  +AR AL  E
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNE 180

Query: 624 NDVDICSDFPTQIHLDDDQHSNRQNRCGC 710
            + +I    P  I +       R   C C
Sbjct: 181 PEEEIY--LPETIDVASGGRPQRSTGCEC 207
>sp|O24461|RAB7_PRUAR Ras-related protein Rab7
          Length = 207

 Score =  253 bits (646), Expect = 4e-67
 Identities = 126/209 (60%), Positives = 154/209 (73%), Gaps = 3/209 (1%)
 Frame = +3

Query: 93  MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 272
           MASR          GDSGVGKTSLMNQ+VNRKF+NQYKATIGADFLTK+V  +DR+ T+Q
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 273 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 452
           IWDTAGQERFQSLGVAFYRGADCCVLVYDV +  +F+ L++WR+EFLIQ+ P DPE FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPF 120

Query: 453 VVIGNKVDLE---SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQE 623
           VV+GNK+D++   SR VS ++A+ WC SKG+IPYFE SAKE  NV+ AF  +A+ AL  E
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNE 180

Query: 624 NDVDICSDFPTQIHLDDDQHSNRQNRCGC 710
            + +I    P  I +       R + C C
Sbjct: 181 PEEEIY--LPDTIDVAGGGRQQRSSGCEC 207
>sp|P31022|RAB7_PEA Ras-related protein Rab7
          Length = 206

 Score =  246 bits (629), Expect = 4e-65
 Identities = 118/185 (63%), Positives = 145/185 (78%), Gaps = 3/185 (1%)
 Frame = +3

Query: 93  MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 272
           M SR          GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK+V  +DR+ T+Q
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 273 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 452
           IWDTAGQERFQSLGVAFYRGADCCVLVYDV    +F  L++WR+EFLIQ+ P DPE FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPF 120

Query: 453 VVIGNKVDLE---SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQE 623
           VVIGNK+D++   SR VS ++A+ WC +KG+IPYFE SAKE +NVE+AF  +A+ AL   
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSG 180

Query: 624 NDVDI 638
            + ++
Sbjct: 181 EEEEL 185
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,984,628
Number of Sequences: 369166
Number of extensions: 1776086
Number of successful extensions: 5585
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4937
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)