Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_P08
(778 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24984|COX1_COTJA Cytochrome c oxidase subunit 1 (Cytoch... 400 e-111
sp|P18943|COX1_CHICK Cytochrome c oxidase subunit 1 (Cytoch... 398 e-111
sp|O21399|COX1_STRCA Cytochrome c oxidase subunit 1 (Cytoch... 390 e-108
sp|Q94WR7|COX1_BUTBU Cytochrome c oxidase subunit 1 (Cytoch... 389 e-108
sp|P34188|COX1_CROLA Cytochrome c oxidase subunit 1 (Cytoch... 362 e-100
sp|Q9MIY8|COX1_BRARE Cytochrome c oxidase subunit 1 (Cytoch... 360 2e-99
sp|Q36775|COX1_GADMO Cytochrome c oxidase subunit 1 (Cytoch... 359 5e-99
sp|P48170|COX1_ONCMY Cytochrome c oxidase subunit 1 (Cytoch... 356 4e-98
sp|O78681|COX1_CARAU Cytochrome c oxidase subunit 1 (Cytoch... 355 6e-98
sp|Q9ZZM6|COX1_SALSA Cytochrome c oxidase subunit 1 (Cytoch... 355 8e-98
>sp|P24984|COX1_COTJA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 400 bits (1028), Expect = e-111
Identities = 203/235 (86%), Positives = 210/235 (89%)
Frame = +3
Query: 3 GFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS*LATLHGGTIK*DPPML* 182
GFLGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTGIKVFS LATLHGGTIK DPPML
Sbjct: 282 GFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIKVFSWLATLHGGTIKWDPPMLW 341
Query: 183 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH*FPLF 362
ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH FPLF
Sbjct: 342 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTHWFPLF 401
Query: 363 TGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSDYPDAYXXXXXXXXXXXXX 542
TGFTLHP+ TKAHFGV+FTGVNLTFFPQHFLGLAG+PRRYSDYPDAY
Sbjct: 402 TGFTLHPTWTKAHFGVMFTGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTLSSIGSLI 461
Query: 543 XXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQE 707
AVI+L+FIV EA SAKRKVLQPELTATNIE IHGCPPPYHTFEEPAFVQVQE
Sbjct: 462 SMTAVIMLMFIVWEAFSAKRKVLQPELTATNIEWIHGCPPPYHTFEEPAFVQVQE 516
>sp|P18943|COX1_CHICK Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 515
Score = 398 bits (1023), Expect = e-111
Identities = 203/235 (86%), Positives = 209/235 (88%)
Frame = +3
Query: 3 GFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS*LATLHGGTIK*DPPML* 182
GFLGFIV AHH+FTV MDVDTRAYFTSAT+IIAIPTGIKVFS LATLHGGTIK DPPML
Sbjct: 281 GFLGFIVWAHHMFTVRMDVDTRAYFTSATMIIAIPTGIKVFSWLATLHGGTIKWDPPMLW 340
Query: 183 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH*FPLF 362
ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH FPLF
Sbjct: 341 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTHWFPLF 400
Query: 363 TGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSDYPDAYXXXXXXXXXXXXX 542
TGFTLHPS TKAHFGV+FTGVNLTFFPQHFLGLAG+PRRYSDYPDAY
Sbjct: 401 TGFTLHPSWTKAHFGVMFTGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTLSSIGSLI 460
Query: 543 XXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQE 707
AVI+L+FIV EA SAKRKVLQPELTATNIE IHGCPPPYHTFEEPAFVQVQE
Sbjct: 461 SMTAVIMLMFIVWEAFSAKRKVLQPELTATNIEWIHGCPPPYHTFEEPAFVQVQE 515
>sp|O21399|COX1_STRCA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 390 bits (1001), Expect = e-108
Identities = 196/235 (83%), Positives = 208/235 (88%)
Frame = +3
Query: 3 GFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS*LATLHGGTIK*DPPML* 182
GFLGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTGIKVFS LATLHGGTIK DPP+L
Sbjct: 282 GFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIKVFSWLATLHGGTIKWDPPILW 341
Query: 183 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH*FPLF 362
ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH FPLF
Sbjct: 342 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTHWFPLF 401
Query: 363 TGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSDYPDAYXXXXXXXXXXXXX 542
TG+TLHP+ KAHFGV+FTGVNLTFFPQHFLGLAG+PRRYSDYPDAY
Sbjct: 402 TGYTLHPTWAKAHFGVMFTGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTMSSIGSLI 461
Query: 543 XXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQE 707
AVI+L+FI+ EA S+KRKVLQPEL ATNIE IHGCPPP+HTFEEPAFVQVQE
Sbjct: 462 SMTAVIMLMFIIWEAFSSKRKVLQPELIATNIEWIHGCPPPHHTFEEPAFVQVQE 516
>sp|Q94WR7|COX1_BUTBU Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 389 bits (999), Expect = e-108
Identities = 194/235 (82%), Positives = 206/235 (87%)
Frame = +3
Query: 3 GFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS*LATLHGGTIK*DPPML* 182
GFLGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTGIKVFS LATLHGGTIK DPPML
Sbjct: 282 GFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIKVFSWLATLHGGTIKWDPPMLW 341
Query: 183 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH*FPLF 362
ALGFIFLFTIGGLTGIVLANSSLDIALHD YYVVAHFHYVLSMGAVFAILAGFTH FPL
Sbjct: 342 ALGFIFLFTIGGLTGIVLANSSLDIALHDAYYVVAHFHYVLSMGAVFAILAGFTHWFPLL 401
Query: 363 TGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSDYPDAYXXXXXXXXXXXXX 542
TGFTLHP+ KAHFGV+FTGVNLTFFPQHFLGLAG+PRRYSDYPDAY
Sbjct: 402 TGFTLHPTWAKAHFGVMFTGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTLSSIGSLI 461
Query: 543 XXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQE 707
AVI+L+FI+ EA ++KRK+LQPELT TN+E IHGCPPPYHTFEEPAFVQVQE
Sbjct: 462 SMTAVIMLMFIIWEAFASKRKILQPELTTTNVEWIHGCPPPYHTFEEPAFVQVQE 516
>sp|P34188|COX1_CROLA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 362 bits (929), Expect = e-100
Identities = 179/234 (76%), Positives = 198/234 (84%)
Frame = +3
Query: 3 GFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS*LATLHGGTIK*DPPML* 182
G LGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS LATLHGGTIK D PML
Sbjct: 281 GLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGTIKWDTPMLW 340
Query: 183 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH*FPLF 362
ALGFIFLFT+GGLTGIVL+NSSLDI LHDTYYVVAHFHYVLSMGAVFAI+AGF H FPLF
Sbjct: 341 ALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLF 400
Query: 363 TGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSDYPDAYXXXXXXXXXXXXX 542
TGF+LH + TK HFGV+F GVNLTFFPQHFLGLAG+PRRYSDYPDAY
Sbjct: 401 TGFSLHDTWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLI 460
Query: 543 XXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQ 704
AVII +FI+ EA ++KR+V+ ELT TN+E +HGCPPPYHTFEEPAFVQV+
Sbjct: 461 SLVAVIIFLFILWEAFASKRQVMSVELTMTNVEWLHGCPPPYHTFEEPAFVQVR 514
>sp|Q9MIY8|COX1_BRARE Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 360 bits (924), Expect = 2e-99
Identities = 179/234 (76%), Positives = 197/234 (84%)
Frame = +3
Query: 3 GFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS*LATLHGGTIK*DPPML* 182
G LGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS LATLHGG IK + PML
Sbjct: 281 GLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGAIKWETPMLW 340
Query: 183 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH*FPLF 362
ALGFIFLFT+GGLTGIVLANSSLDI LHDTYYVVAHFHYVLSMGAVFAI+AGF H FPLF
Sbjct: 341 ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLF 400
Query: 363 TGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSDYPDAYXXXXXXXXXXXXX 542
TG+TL+ TK HFGV+F GVNLTFFPQHFLGLAG+PRRYSDYPDAY
Sbjct: 401 TGYTLNSVWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYALWNTVSSIGSLI 460
Query: 543 XXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQ 704
AVI+ +FI+ EA +AKR+VL ELTATN+E +HGCPPPYHTFEEPAFVQ+Q
Sbjct: 461 SLVAVIMFLFILWEAFTAKREVLSVELTATNVEWLHGCPPPYHTFEEPAFVQIQ 514
>sp|Q36775|COX1_GADMO Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 359 bits (921), Expect = 5e-99
Identities = 176/236 (74%), Positives = 198/236 (83%)
Frame = +3
Query: 3 GFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS*LATLHGGTIK*DPPML* 182
G LGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS LATLHGG+IK + P+L
Sbjct: 281 GLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLW 340
Query: 183 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH*FPLF 362
ALGFIFLFT+GGLTGIVLANSSLDI LHDTYYVVAHFHYVLSMGAVFAI+A F H FPLF
Sbjct: 341 ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAAFVHWFPLF 400
Query: 363 TGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSDYPDAYXXXXXXXXXXXXX 542
TG+TLH + TK HFGV+F GVNLTFFPQHFLGLAG+PRRYSDYPDAY
Sbjct: 401 TGYTLHDTWTKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLI 460
Query: 543 XXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQER 710
AVI+ +FI+ EA +AKR+V+ E+T TN+E +HGCPPPYHTFEEPAFVQ+Q R
Sbjct: 461 SLMAVIMFLFILWEAFAAKREVMAVEMTMTNVEWLHGCPPPYHTFEEPAFVQIQTR 516
>sp|P48170|COX1_ONCMY Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 356 bits (913), Expect = 4e-98
Identities = 175/234 (74%), Positives = 196/234 (83%)
Frame = +3
Query: 3 GFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS*LATLHGGTIK*DPPML* 182
G LGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS LATLHGG+IK + P+L
Sbjct: 281 GLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLW 340
Query: 183 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH*FPLF 362
ALGFIFLFT+GGLTGIVLANSSLDI LHDTYYVVAHFHYVLSMGAVFAI+ F H FPLF
Sbjct: 341 ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGAFVHWFPLF 400
Query: 363 TGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSDYPDAYXXXXXXXXXXXXX 542
TG+TLH + TK HFG++F GVNLTFFPQHFLGLAG+PRRYSDYPDAY
Sbjct: 401 TGYTLHSTWTKIHFGIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLV 460
Query: 543 XXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQ 704
AVI+ +FI+ EA +AKR+V ELT+TN+E +HGCPPPYHTFEEPAFVQVQ
Sbjct: 461 SLVAVIMFLFILWEAFAAKREVASIELTSTNVEWLHGCPPPYHTFEEPAFVQVQ 514
>sp|O78681|COX1_CARAU Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 355 bits (912), Expect = 6e-98
Identities = 175/234 (74%), Positives = 196/234 (83%)
Frame = +3
Query: 3 GFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS*LATLHGGTIK*DPPML* 182
G LGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS LATLHGG+IK + PML
Sbjct: 281 GLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPMLW 340
Query: 183 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH*FPLF 362
ALGFIFLFT+GGLTGIVL+NSSLDI LHDTYYVVAHFHYVLSMGAVFAI+A F H FPL
Sbjct: 341 ALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAAFVHWFPLL 400
Query: 363 TGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSDYPDAYXXXXXXXXXXXXX 542
TG+TLH + TK HFGV+F GVNLTFFPQHFLGLAG+PRRYSDYPDAY
Sbjct: 401 TGYTLHSAWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYALWNTVSSIGSLI 460
Query: 543 XXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQ 704
AVI+ +FI+ EA +AKR+VL ELT TN+E +HGCPPPYHT+EEPAFVQ+Q
Sbjct: 461 SLVAVIMFLFILWEAFAAKREVLSVELTMTNVEWLHGCPPPYHTYEEPAFVQIQ 514
>sp|Q9ZZM6|COX1_SALSA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 355 bits (911), Expect = 8e-98
Identities = 174/234 (74%), Positives = 196/234 (83%)
Frame = +3
Query: 3 GFLGFIV*AHHIFTVGMDVDTRAYFTSATIIIAIPTGIKVFS*LATLHGGTIK*DPPML* 182
G LGFIV AHH+FTVGMDVDTRAYFTSAT+IIAIPTG+KVFS LATLHGG+IK + P+L
Sbjct: 281 GLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLW 340
Query: 183 ALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTH*FPLF 362
ALGFIFLFT+GGLTGIVLANSSLDI LHDTYYVVAHFHYVLSMGAVFAI+ F H FPLF
Sbjct: 341 ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGAFVHWFPLF 400
Query: 363 TGFTLHPS*TKAHFGVIFTGVNLTFFPQHFLGLAGIPRRYSDYPDAYXXXXXXXXXXXXX 542
TG+TLH + TK HFG++F GVNLTFFPQHFLGLAG+PRRYSDYPDAY
Sbjct: 401 TGYTLHSTWTKIHFGIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSIGSLI 460
Query: 543 XXXAVIILIFIV*EALSAKRKVLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQ 704
AVI+ +FI+ EA +AKR+V E+T+TN+E +HGCPPPYHTFEEPAFVQVQ
Sbjct: 461 SLVAVIMFLFILWEAFAAKREVASIEMTSTNVEWLHGCPPPYHTFEEPAFVQVQ 514
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,740,422
Number of Sequences: 369166
Number of extensions: 1894345
Number of successful extensions: 5143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4994
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)