Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_O14
(408 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6FP25|PEX22_CANGA Peroxisome assembly protein 22 (Perox... 37 0.020
sp|Q07540|FRDA_YEAST Frataxin homolog, mitochondrial precur... 29 3.2
sp|Q97QS8|GLGB_STRPN 1,4-alpha-glucan branching enzyme (Gly... 29 4.2
sp|Q8DPS6|GLGB_STRR6 1,4-alpha-glucan branching enzyme (Gly... 29 4.2
sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1 28 5.5
sp|Q751B2|EBS1_ASHGO Protein EBS1 28 5.5
sp|Q8E7X2|PUR7_STRA3 Phosphoribosylaminoimidazole-succinoca... 28 7.2
sp|O14139|HRP3_SCHPO Chromodomain helicase hrp3 28 7.2
sp|P21538|REB1_YEAST DNA-binding protein REB1 (QBP) 28 9.3
sp|P38692|KIC1_YEAST Serine/threonine-protein kinase KIC1 (... 28 9.3
>sp|Q6FP25|PEX22_CANGA Peroxisome assembly protein 22 (Peroxin-22)
Length = 174
Score = 36.6 bits (83), Expect = 0.020
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Frame = +2
Query: 26 NSNDDYLDRFINNDD--SKSNAFENDAELQYSVPHPVNAISHTFVSDKSMPTEMKWDYII 199
+S DD + +F DD ++ N + ++ ++ + S E+ WD I+
Sbjct: 30 HSEDDSVSKFNQQDDGTAQDNQIKEKPAIKLGKKRLHRSLCVIISNKLSNLVELDWDEIL 89
Query: 200 VEDIMLFSLPE------------SAHK--QKDFEMDLFNFLNMLKMNELLMC 313
EDI+ LP HK D E+ L+ + LK NELL+C
Sbjct: 90 QEDIVFLILPSVNDFQNSNDIKTDTHKIINCDTELGLWACVRTLKKNELLVC 141
>sp|Q07540|FRDA_YEAST Frataxin homolog, mitochondrial precursor [Contains: Frataxin
homolog intermediate form]
Length = 174
Score = 29.3 bits (64), Expect = 3.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 14 ESYFNSNDDYLDRFINNDDSKSNAFEN---DAELQYSVPHPVNAISHTFVSDKSMPTEMK 184
E Y DDYLD +++ + S A + D EL + V T+V +K P +
Sbjct: 71 EKYHEEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPAFGTYVINKQPPNKQI 130
Query: 185 W 187
W
Sbjct: 131 W 131
>sp|Q97QS8|GLGB_STRPN 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE)
(1,4-alpha-D-glucan:1,4-alpha-D-glucan
6-glucosyl-transferase)
Length = 642
Score = 28.9 bits (63), Expect = 4.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 176 EMKWDYIIVEDIMLFSLPESAHKQKDFEMDLFNFLNMLKMNELL 307
+ KW+ + DI+ F + +++ DF + F+F+ + K N LL
Sbjct: 375 DYKWNMGWMNDILRFYEEDPIYRKYDFNLVTFSFMYVFKENYLL 418
>sp|Q8DPS6|GLGB_STRR6 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE)
(1,4-alpha-D-glucan:1,4-alpha-D-glucan
6-glucosyl-transferase)
Length = 642
Score = 28.9 bits (63), Expect = 4.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 176 EMKWDYIIVEDIMLFSLPESAHKQKDFEMDLFNFLNMLKMNELL 307
+ KW+ + DI+ F + +++ DF + F+F+ + K N LL
Sbjct: 375 DYKWNMGWMNDILRFYEEDPIYRKYDFNLVTFSFMYVFKENYLL 418
>sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1
Length = 1956
Score = 28.5 bits (62), Expect = 5.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 8 VRESYFNSNDDYLDRFINNDDSKSNAFEND 97
V+ +Y N+NDD D NNDD ++ ND
Sbjct: 897 VKSTYGNNNDDNNDDDNNNDDDNNDDNNND 926
>sp|Q751B2|EBS1_ASHGO Protein EBS1
Length = 775
Score = 28.5 bits (62), Expect = 5.5
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 113 SVPHPVNAI-SHT-FVSDKSMPTEMKWDYIIVEDIMLFSLPESAHKQKDF-EMDLFNFLN 283
SV H +N I +HT + + K DY EDIML H DF ++DLF N
Sbjct: 436 SVAHLLNNILAHTEYQQLMDVEHRPKRDYFFQEDIMLKDFSAIGHTLSDFNDVDLFQMEN 495
Query: 284 M 286
+
Sbjct: 496 L 496
>sp|Q8E7X2|PUR7_STRA3 Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR
synthetase)
Length = 234
Score = 28.1 bits (61), Expect = 7.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 20 YFNSNDDYLDRFINNDDSKSNAFENDAELQY 112
++ NDD D FIN++ K ND E+ Y
Sbjct: 119 FYYKNDDLNDPFINDEHMKFLGIVNDEEIAY 149
>sp|O14139|HRP3_SCHPO Chromodomain helicase hrp3
Length = 1388
Score = 28.1 bits (61), Expect = 7.2
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +2
Query: 152 VSDKSMPTEMKWDYIIVEDIMLFSLPESAHKQKDFEMDLFNFLNMLKMNELLM 310
+ D+S+ + +KW Y+ +++ AH+ K+ E L+ L+ K + L+
Sbjct: 491 LKDRSVLSNIKWQYMAIDE---------AHRLKNSESSLYEALSQFKNSNRLL 534
>sp|P21538|REB1_YEAST DNA-binding protein REB1 (QBP)
Length = 810
Score = 27.7 bits (60), Expect = 9.3
Identities = 23/80 (28%), Positives = 33/80 (41%)
Frame = +2
Query: 26 NSNDDYLDRFINNDDSKSNAFENDAELQYSVPHPVNAISHTFVSDKSMPTEMKWDYIIVE 205
N+NDD NNDDS++ + N E +V H + H V D
Sbjct: 61 NNNDDSNRNEDNNDDSENISALNANESSSNVDHANSNEQHNAVMD--------------- 105
Query: 206 DIMLFSLPESAHKQKDFEMD 265
+ L ++AH Q+D E D
Sbjct: 106 ----WYLRQTAHNQQDDEDD 121
>sp|P38692|KIC1_YEAST Serine/threonine-protein kinase KIC1 (Kinase that interacts with
CDC31) (N-rich kinase 1)
Length = 1080
Score = 27.7 bits (60), Expect = 9.3
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Frame = +2
Query: 101 ELQYSVPHPVNAISHTFVSDKSMPTEMKWD--------YIIVEDIMLFSLPESAHKQKDF 256
E Q S+ N I D EMKWD YII +I L +L E ++
Sbjct: 333 EAQKSIASNDNEIKRVNEGD----VEMKWDFDSLSSSDYIIENNINLDALAEDNNEWATA 388
Query: 257 EMDLFNF 277
+ DLFN+
Sbjct: 389 QHDLFNY 395
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,888,435
Number of Sequences: 369166
Number of extensions: 702762
Number of successful extensions: 1596
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)