Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_O09
(792 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06680|PRPH_MESAU Acidic proline-rich protein HP43A prec... 53 8e-07
sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000 52 2e-06
sp|Q49378|P32_MYCGA P32 adhesin (Cytadhesin P32) 50 7e-06
sp|Q9V9W8|PYGO_DROME Pygopus protein (Gammy legs protein) 45 3e-04
sp|Q01443|SSP2_PLAYO Sporozoite surface protein 2 precursor 45 3e-04
sp|P25439|BRM_DROME Homeotic gene regulator (Brahma protein) 44 5e-04
sp|Q62280|SSXT_MOUSE SSXT protein (SYT protein) (Synovial s... 43 0.001
sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2 42 0.001
sp|Q6P1E1|ZIM10_MOUSE Retinoic acid-induced protein 17 (PIA... 42 0.001
sp|Q15532|SSXT_HUMAN SSXT protein (Synovial sarcoma, transl... 42 0.002
>sp|P06680|PRPH_MESAU Acidic proline-rich protein HP43A precursor
Length = 183
Score = 53.1 bits (126), Expect = 8e-07
Identities = 54/187 (28%), Positives = 65/187 (34%), Gaps = 5/187 (2%)
Frame = +3
Query: 18 STDQVRISQEIQSDPNEIH-RPSPVKNQIPSGYVNVNQPPIQSSINSTLPVVSSNMPYSM 194
S Q+ ++ DP ++H RP Q PS + N+ P
Sbjct: 21 SISQLSEEEQQGQDPGQLHQRPGQFPPQ-PSASDEEGDDDGEEDGNAP-----EGPPQQG 74
Query: 195 GNHNAPNKNIPGNMCAPNMPPSHIGQNLPNQNMVPNIGGQNMPPNIGGQNMPPNIGG--Q 368
G+H P PGN P P GQ QN PP G Q PP G Q
Sbjct: 75 GDHQKPRPPKPGNQQGP---PQQEGQQ------------QNRPPKPGNQEGPPQQEGQQQ 119
Query: 369 NMPPNIGGQNMLPNISSQSIGSQNMPMNAGGQNMPMNAGG--QNMPMNVGGQNMPMNVGG 542
N PP G Q P Q QN P G Q P G QN P G Q P G
Sbjct: 120 NRPPKPGNQEGPPQQEGQ---QQNRPPKPGNQEGPPQQEGQQQNRPPKPGNQEGPPQQGS 176
Query: 543 QNMSMNV 563
+ S ++
Sbjct: 177 EEQSTSL 183
>sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000
Length = 395
Score = 51.6 bits (122), Expect = 2e-06
Identities = 37/93 (39%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +3
Query: 297 PNIGGQNMPPNIGGQ-NMPPNIGGQNMPPNIGGQNMLPNISSQSIGSQN-MPMNAGGQNM 470
P +GG PP+IGG PP++GG PP GQN P + G ++ P A QN
Sbjct: 246 PPMGGPPPPPHIGGSAPPPPHMGGSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQN- 304
Query: 471 PMNAGGQNMPMNVGGQNMPMNVGGQNMSMNVGG 569
N GG P N GG P N GG + N+GG
Sbjct: 305 --NMGGPRPPQNYGG-TPPPNYGGAPPANNMGG 334
Score = 38.9 bits (89), Expect = 0.016
Identities = 35/110 (31%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Frame = +3
Query: 252 PPSHIGQNLPNQNMVPNIGGQNMPP-------------NIGGQNMPPNIGGQNMPPNIGG 392
PP HIG + P P++GG PP N+GG PP G PP
Sbjct: 253 PPPHIGGSAPPP---PHMGGSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGA---PP---- 302
Query: 393 QNMLPNISSQSIGSQNMPMNAGGQNMPMNAGGQNMPMNVGGQNMPMNVGG 542
++G P N GG P N GG N+GG P N GG
Sbjct: 303 --------QNNMGGPRPPQNYGG-TPPPNYGGAPPANNMGGA-PPPNYGG 342
Score = 37.7 bits (86), Expect = 0.036
Identities = 41/138 (29%), Positives = 51/138 (36%), Gaps = 5/138 (3%)
Frame = +3
Query: 102 PSGYVNVNQPPIQSSINSTLPVVSSNM--PYSMGNHNAPNKNIPGNMCAPNMPPSHIGQN 275
P ++ + PP + P +NM P + AP +N NM P P ++ G
Sbjct: 263 PPPHMGGSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQN---NMGGPRPPQNYGGTP 319
Query: 276 LPNQNMVP---NIGGQNMPPNIGGQNMPPNIGGQNMPPNIGGQNMLPNISSQSIGSQNMP 446
PN P N+GG PPN GG PP G PP GG N Q P
Sbjct: 320 PPNYGGAPPANNMGGA-PPPNYGGG--PPPQYGAVPPPQYGGAPPQNNNYQQQGSGMQQP 376
Query: 447 MNAGGQNMPMNAGGQNMP 500
N P N G P
Sbjct: 377 QYQ--NNYPPNRDGSGNP 392
>sp|Q49378|P32_MYCGA P32 adhesin (Cytadhesin P32)
Length = 294
Score = 50.1 bits (118), Expect = 7e-06
Identities = 49/159 (30%), Positives = 65/159 (40%), Gaps = 8/159 (5%)
Frame = +3
Query: 102 PSGYVNVNQPPIQSSIN-STLPVVSSNMPYSMGNHNA-PNKNIPGNMCAPNMPPSHIGQN 275
P+ VN +P + +N + P + N P P + I M P+ +G
Sbjct: 124 PTEEVNTQEPTQPAGVNVANNPQMGINQPQINPQFGPNPQQRINPQCFGGPMQPNQMGMR 183
Query: 276 LPNQNMVPNIGGQNMPPNIGGQN-----MPPNIGGQNMPPNIGGQNMLPNISSQSIGSQN 440
M P +GG MPPN G MPP +GG MPP N +PN++ G +
Sbjct: 184 PGFNQMPPQMGG--MPPNQMGMRPGFNQMPPQMGG--MPPRPNFPNQMPNMNQPRPGFR- 238
Query: 441 MPMNAGGQNMPMNAGGQ-NMPMNVGGQNMPMNVGGQNMS 554
P GG M AGG N P G N MN Q M+
Sbjct: 239 -PQPGGGVPMGNKAGGGFNHPGTPMGPNR-MNFPNQGMN 275
Score = 38.5 bits (88), Expect = 0.021
Identities = 44/171 (25%), Positives = 63/171 (36%), Gaps = 6/171 (3%)
Frame = +3
Query: 21 TDQVRISQEIQSDPNEIHRPSPVKNQIPSGYVNVNQPPIQSSINSTLPVVSSNMPYSMGN 200
T+ + ++E+ + E +P+ V N + + +NQP I P N P G
Sbjct: 119 TEAIEPTEEVNTQ--EPTQPAGV-NVANNPQMGINQPQINPQFGPN-PQQRIN-PQCFGG 173
Query: 201 HNAPNKN--IPG-NMCAPNM---PPSHIGQNLPNQNMVPNIGGQNMPPNIGGQNMPPNIG 362
PN+ PG N P M PP+ +G M P +GG PN Q N
Sbjct: 174 PMQPNQMGMRPGFNQMPPQMGGMPPNQMGMRPGFNQMPPQMGGMPPRPNFPNQMPNMNQP 233
Query: 363 GQNMPPNIGGQNMLPNISSQSIGSQNMPMNAGGQNMPMNAGGQNMPMNVGG 515
P GG + N + PM N P G N P ++ G
Sbjct: 234 RPGFRPQPGGGVPMGNKAGGGFNHPGTPMGPNRMNFPNQ--GMNQPPHMAG 282
Score = 32.7 bits (73), Expect = 1.2
Identities = 30/109 (27%), Positives = 36/109 (33%), Gaps = 6/109 (5%)
Frame = +3
Query: 252 PPSHIGQNLPNQNMVPNIGGQNMPPNIGGQNMPPNIGG---QNMPPNIGGQNMLPNISSQ 422
P + P Q N+ N I + P G Q + P G M PN
Sbjct: 124 PTEEVNTQEPTQPAGVNVAN-NPQMGINQPQINPQFGPNPQQRINPQCFGGPMQPNQMGM 182
Query: 423 SIGSQNMPMNAGGQ---NMPMNAGGQNMPMNVGGQNMPMNVGGQNMSMN 560
G MP GG M M G MP +GG N Q +MN
Sbjct: 183 RPGFNQMPPQMGGMPPNQMGMRPGFNQMPPQMGGMPPRPNFPNQMPNMN 231
>sp|Q9V9W8|PYGO_DROME Pygopus protein (Gammy legs protein)
Length = 815
Score = 44.7 bits (104), Expect = 3e-04
Identities = 54/180 (30%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Frame = +3
Query: 72 HRPSPVKNQIPSGYVNVNQPPIQSSINSTLPVVSSNMPYSMGNH-NAPNKNI---PGNMC 239
H P P+ P +N PP Q S N P+ +H P ++ PG
Sbjct: 553 HGPGPM----PGMGMNQMLPPQQPSHLGPPHPNMMNHPHHPHHHPGGPPPHMMGGPGMHG 608
Query: 240 APNMPPSHIGQNLPNQNMVPNIGGQNMPPNIGGQNMP------PNIGGQNMPPN--IGGQ 395
P P H+G PN +M+ G N P++G +M P GG N PP+ +
Sbjct: 609 GPAGMPPHMGGG-PNPHMMGGPHG-NAGPHMGHGHMGGVPGPGPGPGGMNGPPHPHMSPH 666
Query: 396 NMLPNISSQSIGSQNMPMNAGGQNMPMNAGGQ--NM-PMNVGGQNMPMNVGGQNMSMNVG 566
+ P+ +G M GG PM GG NM PM G PM VG + M+M G
Sbjct: 667 HGHPHHHHNPMGGPGPNMFGGGGGGPMGPGGPMGNMGPMGGGPMGGPMGVGPKPMTMGGG 726
Score = 40.8 bits (94), Expect = 0.004
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Frame = +3
Query: 192 MGNHNAPNKNIPGNMCAPNMPPSHIGQNLPNQNM-VPNIGGQNMPPNIGGQNMP------ 350
MG+ + P+ ++ G M P H Q P + +P P GG P
Sbjct: 171 MGHPHGPHPHMGGPPPMRGMSPMHPHQMGPGPGVGLPPHMNHGRPGGPGGPGGPVPMGSP 230
Query: 351 ----PNIGGQNMPPNIGGQNMLPNISSQSIGSQNMPMNAGGQNMPMNAGGQNMPMNVGGQ 518
+GG + +GG P+IS +G + GG N P Q PM GQ
Sbjct: 231 MGGIAGMGGMSPMGGMGG----PSISPHHMGMGGLSPMGGGPNGPNPRAMQGSPMGGPGQ 286
Query: 519 NMPMN 533
N PMN
Sbjct: 287 NSPMN 291
Score = 40.0 bits (92), Expect = 0.007
Identities = 41/130 (31%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Frame = +3
Query: 174 SNMPYSMGNHNAPNKNI---PGNMCAPNMPPSHIGQNLPNQNMVPNIGGQNMPPNIGGQN 344
+ MP MG PN ++ P P+M H+G +P P GG N PP+ +
Sbjct: 611 AGMPPHMGG--GPNPHMMGGPHGNAGPHMGHGHMG-GVPGPG--PGPGGMNGPPH---PH 662
Query: 345 MPPNIGGQNMPPN-IGGQNMLPNISSQSIGSQNMPMNAGGQNMPMNAGGQNMPMNVGGQN 521
M P+ G + N +GG PN+ G P G PM G PM VG +
Sbjct: 663 MSPHHGHPHHHHNPMGGPG--PNMFGGGGGGPMGPGGPMGNMGPMGGGPMGGPMGVGPK- 719
Query: 522 MPMNVGGQNM 551
PM +GG M
Sbjct: 720 -PMTMGGGKM 728
>sp|Q01443|SSP2_PLAYO Sporozoite surface protein 2 precursor
Length = 827
Score = 44.7 bits (104), Expect = 3e-04
Identities = 47/164 (28%), Positives = 57/164 (34%), Gaps = 7/164 (4%)
Frame = +3
Query: 57 DPNEIHRPSPVKNQIPSGYVNVNQPPIQSSINSTLPVVSSNMPYSMGNHNAPNK-NIPGN 233
D +I P + N+IP N +P + N + N P + N N PN N P N
Sbjct: 279 DCPQIPIPPVIPNKIPEKPSNPEEPVNPNDPNDPNNPNNPNNPNNPNNPNNPNNPNNPNN 338
Query: 234 MCAPNMPPSHIGQNLPNQNMVPNIGGQNMPPNIGGQNMPPNIGGQNMPPNIGGQNMLPNI 413
PN P + N PN PN N P N N P N N P N N P
Sbjct: 339 PNNPNNPNNPNNPNNPNNPNNPN--NPNNPNNPNNPNNPNNPNNPNDPSNPNNPN--PKK 394
Query: 414 SSQSIGSQNMPM------NAGGQNMPMNAGGQNMPMNVGGQNMP 527
+ + N P N N P N N P N P
Sbjct: 395 RNPKRRNPNKPKPNKPNPNKPNPNEPSNPNKPN-PNEPSNPNKP 437
Score = 41.2 bits (95), Expect = 0.003
Identities = 44/173 (25%), Positives = 60/173 (34%), Gaps = 4/173 (2%)
Frame = +3
Query: 54 SDPNEIHRPSPVKNQIPSGYVNVNQPPIQSSINSTLPVVSSNMPYSMGNHNAPNKNIPGN 233
++PN + P+ N P+ N N P S+ N+ P + N N P N P
Sbjct: 358 NNPNNPNNPNNPNN--PNNPNNPNNPNDPSNPNNPNPKKRNP---KRRNPNKPKPNKPN- 411
Query: 234 MCAPNMP----PSHIGQNLPNQNMVPNIGGQNMPPNIGGQNMPPNIGGQNMPPNIGGQNM 401
PN P PS+ + PN+ PN N P N PN N P N N
Sbjct: 412 ---PNKPNPNEPSNPNKPNPNEPSNPNKPNPNEPSN-------PNKPNPNEPSNPNKPNP 461
Query: 402 LPNISSQSIGSQNMPMNAGGQNMPMNAGGQNMPMNVGGQNMPMNVGGQNMSMN 560
++ + N P N + P N P N + P N N
Sbjct: 462 NEPLNPNEPSNPNEPSNPNAPSNPNEPSNPNEPSNPNEPSNPNEPSNPNEPSN 514
Score = 39.3 bits (90), Expect = 0.012
Identities = 44/168 (26%), Positives = 56/168 (33%)
Frame = +3
Query: 57 DPNEIHRPSPVKNQIPSGYVNVNQPPIQSSINSTLPVVSSNMPYSMGNHNAPNKNIPGNM 236
+PNE P+ PS N N+P N P P N N PN N P N
Sbjct: 416 NPNEPSNPNKPNPNEPS---NPNKPNPNEPSNPNKP-----NPNEPSNPNKPNPNEPLNP 467
Query: 237 CAPNMPPSHIGQNLPNQNMVPNIGGQNMPPNIGGQNMPPNIGGQNMPPNIGGQNMLPNIS 416
P+ P N P+ P+ N P N + P N P N + PN
Sbjct: 468 NEPSNPNEPSNPNAPSNPNEPS--NPNEPSNPNEPSNPNEPSNPNEPSN-PKKPSNPNEP 524
Query: 417 SQSIGSQNMPMNAGGQNMPMNAGGQNMPMNVGGQNMPMNVGGQNMSMN 560
S + N P+N + P N P N + P N N
Sbjct: 525 S----NPNEPLNPNEPSNPNEPSNPNEPSNPEEPSNPKEPSNPNEPSN 568
>sp|P25439|BRM_DROME Homeotic gene regulator (Brahma protein)
Length = 1638
Score = 43.9 bits (102), Expect = 5e-04
Identities = 41/164 (25%), Positives = 54/164 (32%), Gaps = 22/164 (13%)
Frame = +3
Query: 102 PSGYVNVNQPPIQSSINSTLPVVSSNMPYSMGNHNAPNKN---IPGNMCAPNMPPSHIGQ 272
P G + QPP+ P S+ P A N +PG PP H+ Q
Sbjct: 229 PPGSQHAGQPPVPPQ-QQQQPPPSAGTPPQCSTPPASNPYGPPVPGQKMQVAPPPPHMQQ 287
Query: 273 NLPNQNMVPNIGGQNMPPNIGGQNMPPNIGGQNMPPN-------------------IGGQ 395
P P +GG PP I Q P Q+ PP GGQ
Sbjct: 288 GQPLPPQPPQVGG---PPPIQQQQPPQQQQQQSQPPPPEPHQHQLPNGGKPLSMGPSGGQ 344
Query: 396 NMLPNISSQSIGSQNMPMNAGGQNMPMNAGGQNMPMNVGGQNMP 527
++P+ Q +P G +P GG + G MP
Sbjct: 345 PLIPSSPMQPQVRGTLPGMPPGSQVPQPGGGPQRQVPPAGMPMP 388
>sp|Q62280|SSXT_MOUSE SSXT protein (SYT protein) (Synovial sarcoma associated Ss18-alpha)
Length = 418
Score = 42.7 bits (99), Expect = 0.001
Identities = 50/178 (28%), Positives = 70/178 (39%), Gaps = 22/178 (12%)
Frame = +3
Query: 78 PSP-VKNQIPSGYVNVNQPPIQSSINSTLPVVSSNMPYSMGNHNAP---NKNIPGNMCAP 245
P+P ++NQ+ N P+Q S L + +S+M NH + N ++P + P
Sbjct: 115 PAPHMQNQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSNHGSMGGYNHSVPSSQSMP 174
Query: 246 --NMPPSHIGQNL------PNQNMVPNIGG-QNMPPNIGGQNMPP----NIGGQNMPPNI 386
N GQ + PN NM PN G + P NMPP + GQ P +
Sbjct: 175 VQNQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPGGAQHYQGQQAPMGL 234
Query: 387 GGQNMLPNISSQSIGSQNM-PMNAGGQNMPMNAGGQ----NMPMNVGGQNMPMNVGGQ 545
GQ N S +G + M P Q P GQ + GGQ P + Q
Sbjct: 235 MGQ---VNQGSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQ 289
Score = 35.4 bits (80), Expect = 0.18
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 7/120 (5%)
Frame = +3
Query: 225 PGNMCAPNMPPSHIGQNLPNQNMVPNIGGQNMPPNIGGQNMPPNIGGQNMPPNIGGQNML 404
PG M PP N+P+ MV GG P++ Q G +MP G + L
Sbjct: 87 PGGMSQSGPPPPPRSHNMPSDGMV---GGGPPAPHMQNQMNGQMPGPNHMPMQGPGPSQL 143
Query: 405 PNISSQSIGSQNMPM----NAGGQNMPMNAGGQNMPMN---VGGQNMPMNVGGQNMSMNV 563
S + S NMP + GG N + Q+MP+ Q PM G +MN+
Sbjct: 144 ----SMTNSSMNMPSSNHGSMGGYNHSV-PSSQSMPVQNQMTMSQGQPMGNYGPRPNMNM 198
>sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2
Length = 1169
Score = 42.4 bits (98), Expect = 0.001
Identities = 50/184 (27%), Positives = 68/184 (36%), Gaps = 15/184 (8%)
Frame = +3
Query: 36 ISQEIQS----DPNEIHRPSPVKNQIPSGYVNVNQPPIQSS-------INSTLPVVSSNM 182
++Q+ QS D N++ R N P N+N P ++S+ I P +++N
Sbjct: 213 VNQKAQSLNRADNNKLSRAD--NNNFPKK--NLNSPNVKSTPELVGAPIRREDPKINTNR 268
Query: 183 PYSMGNHNAPNKNIPGNMCAPNMPPSHIGQNLPNQNMVP-NIGGQNMPPNIGGQNMPPNI 359
P S N P+ N + N P Q +PN+ P G N P Q P
Sbjct: 269 PNS--NSRQPSSN---TQISANRPGGQNRQGVPNREGGPYRQGSPNRPGTPYRQGAPNRP 323
Query: 360 GGQN---MPPNIGGQNMLPNISSQSIGSQNMPMNAGGQNMPMNAGGQNMPMNVGGQNMPM 530
GGQN +P GG GS N P P G N P Q +P
Sbjct: 324 GGQNRQGVPNREGG-------GPYRQGSPNRPGTPNRPGTPYRQGAPNRPGGQNRQGVPN 376
Query: 531 NVGG 542
GG
Sbjct: 377 REGG 380
Score = 36.2 bits (82), Expect = 0.10
Identities = 45/174 (25%), Positives = 67/174 (38%), Gaps = 8/174 (4%)
Frame = +3
Query: 51 QSDPNEIHRPSPVKNQIPSGYVNVNQPPIQSSINSTLPVVSSNMPYSMGN-HNAPNKNIP 227
+ +P+ + P+KN S +PPIQ I + +SN + +N+ N+
Sbjct: 160 KKNPSALQDKKPLKNSSGSPAKTTARPPIQL-IEKPKNLANSNRNINANKINNSVNQKAQ 218
Query: 228 GNMCAPNMPPSHI-GQNLPNQNM-VPNIGGQNMPPNIGG--QNMPPNIGGQNMPPNIGGQ 395
A N S N P +N+ PN+ ++ P +G + P I N
Sbjct: 219 SLNRADNNKLSRADNNNFPKKNLNSPNV--KSTPELVGAPIRREDPKINTNRPNSNSRQP 276
Query: 396 NMLPNISSQSIGSQN---MPMNAGGQNMPMNAGGQNMPMNVGGQNMPMNVGGQN 548
+ IS+ G QN +P GG P G N P Q P GGQN
Sbjct: 277 SSNTQISANRPGGQNRQGVPNREGG---PYRQGSPNRPGTPYRQGAPNRPGGQN 327
>sp|Q6P1E1|ZIM10_MOUSE Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)
Length = 1072
Score = 42.4 bits (98), Expect = 0.001
Identities = 36/104 (34%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Frame = +3
Query: 156 TLPVVSSNMPYSMGNHNAPNKNIPGNMCAPNMPPSHIGQNLPNQNMVPNIGGQNMPPNIG 335
+LP+ S PY G N N+ N P P + N P PN GQ MP
Sbjct: 403 SLPIQSIKRPYP-GEPNYGNQQYGPNSQFPTQPGQYPTPNPPRPLTSPNYPGQRMPSQPS 461
Query: 336 -GQNMPP--NIGGQNMPPNIGGQNML----PNISSQSIGSQNMP 446
GQ PP N+G P GQN + SS S GS N P
Sbjct: 462 TGQYPPPTVNMGQYYKPEQFNGQNNTFSSGSSYSSYSQGSVNRP 505
Score = 32.7 bits (73), Expect = 1.2
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Frame = +3
Query: 60 PNEIHRPSPVKNQIPSGYVNVNQ---PPIQSSINSTLPVVSSNMPYSMGNHNAP------ 212
P + P Q P VN+ Q P + N+T SS YS G+ N P
Sbjct: 452 PGQRMPSQPSTGQYPPPTVNMGQYYKPEQFNGQNNTFSSGSSYSSYSQGSVNRPPRPVPV 511
Query: 213 ----NKNIPGNMCAPNMPPSHIGQNL-PNQNMVPNIGGQNMPPNIGGQNMPP 353
+ +PGN P P S I L P+Q++ P ++ PN+ PP
Sbjct: 512 ANYPHSPVPGNPTPPMTPGSSIPPYLSPSQDVKPPF-PPDIKPNMSALPPPP 562
Score = 30.0 bits (66), Expect = 7.5
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Frame = +3
Query: 117 NVNQPPIQSSINSTL-PVVSSNMPYSMGNHNAPNKNIP----GNMCAPNMPPSHIGQNLP 281
N NQPP S+ +T+ V +++ +GN A N N P GN A M S+ G N P
Sbjct: 156 NTNQPPGSLSVVTTVWGVTNTSQSQVLGNPMA-NANNPMNPGGNPMASGMSTSNPGINSP 214
Query: 282 ----NQNMVPNIGGQNMP---PNIGGQNMPPNIGG 365
Q G P PN+ G+ P GG
Sbjct: 215 QFAGQQQQFSTKAGPAQPYIQPNMYGRPGYPGSGG 249
>sp|Q15532|SSXT_HUMAN SSXT protein (Synovial sarcoma, translocated to X chromosome) (SYT
protein)
Length = 418
Score = 41.6 bits (96), Expect = 0.002
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Frame = +3
Query: 285 QNMVPNIGGQNMPPNIGGQNM---PPNIGGQNMPPN--IGGQNMLPNISSQSIGSQNMPM 449
Q+++P QNMP GG N PP NMP + +GG P++ +Q G MP
Sbjct: 72 QSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNG--QMP- 128
Query: 450 NAGGQNMPMNAGGQN-MPMNVGGQNMPM----NVGGQNMSM 557
G +MPM G N + M NMP ++GG N S+
Sbjct: 129 --GPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSV 167
Score = 35.4 bits (80), Expect = 0.18
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
Frame = +3
Query: 210 PNKNIP---GNMCAPNMPPSHIGQNLPNQNMVPNIGGQNMPPNIGGQNMPPNIGGQNMPP 380
P +N+P G M PP N+P+ MV GG P++ Q G +MP
Sbjct: 79 PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMV---GGGPPAPHMQNQMNGQMPGPNHMPM 135
Query: 381 NIGGQNMLPNISSQSIGSQNMPMNA----GGQNMPMNAGGQNMPMN---VGGQNMPMNVG 539
G N L +S S NMP ++ GG N + Q+MP+ Q PM
Sbjct: 136 QGPGPNQLNMTNS----SMNMPSSSHGSMGGYNHSV-PSSQSMPVQNQMTMSQGQPMGNY 190
Query: 540 G--QNMSM 557
G NMSM
Sbjct: 191 GPRPNMSM 198
Score = 31.6 bits (70), Expect = 2.6
Identities = 46/176 (26%), Positives = 63/176 (35%), Gaps = 19/176 (10%)
Frame = +3
Query: 102 PSGYVNVNQPPIQSSINSTLPVVSSNMPYSMGNHNAPNKNIPGNMCAPNMPPSHIGQNLP 281
P G PP S N + P + N N +PG P P N+
Sbjct: 87 PGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMT 146
Query: 282 NQNMVPNIGGQNMPPNIGGQNMPPNIGGQNMPPNIGGQNMLPNISSQSIGSQNMPMNAGG 461
N +M NMP + G ++GG N ++ +P + +Q SQ PM G
Sbjct: 147 NSSM-------NMPSSSHG-----SMGGYN--HSVPSSQSMP-VQNQMTMSQGQPMGNYG 191
Query: 462 ----QNMPMNAGGQ----------NMPMNVG----GQNMPMNVGGQ-NMSMNVGGQ 572
+M N G NMP G GQ PM + GQ N ++ GQ
Sbjct: 192 PRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQ 247
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,017,239
Number of Sequences: 369166
Number of extensions: 2196822
Number of successful extensions: 6494
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6031
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)