Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_O08
(721 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99996|AKAP9_HUMAN A-kinase anchor protein 9 (Protein ki... 32 1.3
sp|Q8RGR2|UVRB_FUSNN UvrABC system protein B (UvrB protein)... 32 2.2
sp|Q9HPX1|RS17E_HALSA 30S ribosomal protein S17e 31 2.9
sp|O17820|SRG17_CAEEL Serpentine receptor class gamma-17 (P... 31 3.8
sp|Q8K9I7|SYN_BUCAP Asparaginyl-tRNA synthetase (Asparagine... 31 3.8
sp|P0A850|TIG_ECOLI Trigger factor (TF) >gi|67473486|sp|P0A... 30 5.0
sp|P15924|DESP_HUMAN Desmoplakin (DP) (250/210 kDa paraneop... 30 5.0
sp|P66933|TIG_SALTI Trigger factor (TF) >gi|54042017|sp|P66... 30 5.0
sp|O74387|YNVC_SCHPO Hypothetical protein C3H7.12 in chromo... 30 5.0
sp|Q5PFN3|TIG_SALPA Trigger factor (TF) 30 5.0
>sp|Q99996|AKAP9_HUMAN A-kinase anchor protein 9 (Protein kinase A anchoring protein 9)
(PRKA9) (A-kinase anchor protein 450 kDa) (AKAP 450)
(A-kinase anchor protein 350 kDa) (AKAP 350) (hgAKAP 350)
(AKAP 120-like protein) (Hyperion protein) (Yotiao
protein) (Centrosome- and Golgi-localized PKN-associated
protein) (CG-NAP)
Length = 3911
Score = 32.3 bits (72), Expect = 1.3
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 147 MSSDYKFVSEVFEHLKDAKEILTNPRRKSIEEHITNPKRKCFHPPVPSDLAISIFIR-DS 323
M+S K +S+V +HL +AKE L + K E + K+ C P+P L+ SI + D
Sbjct: 2738 MTSLQKDLSQVRDHLAEAKEKL-SILEKEDETEVQESKKACMFEPLPIKLSKSIASQTDG 2796
Query: 324 TLILAA 341
TL +++
Sbjct: 2797 TLKISS 2802
>sp|Q8RGR2|UVRB_FUSNN UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
Length = 663
Score = 31.6 bits (70), Expect = 2.2
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Frame = +3
Query: 27 SIKEEFGDAYKLQQIQDCLNLITYAFNILDTEKKYGNI--DLMSSDYKFVSEVFEHLKDA 200
S+KE + + ++IQ N A+N +D + I DL++ DY + FE+
Sbjct: 561 SMKEAITETERRRKIQKEYN----AYNHIDPKSIIKEIAEDLINLDYGIEEKKFEN---D 613
Query: 201 KEILTNPRRKSIEEHITNPKRKCFHPPVPSDLAISIFIRDSTLILAAYLLE 353
K++ N + IE+ IT ++K D +I +RD L L LLE
Sbjct: 614 KKVFRN--KTDIEKEITKLEKKIKKLVEELDFEQAIILRDEMLKLKELLLE 662
>sp|Q9HPX1|RS17E_HALSA 30S ribosomal protein S17e
Length = 59
Score = 31.2 bits (69), Expect = 2.9
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +3
Query: 114 DTEKKYGNIDLMSSDYKFVSEVFEHLKDAKEILTNPRRKSIEEHI 248
D KK GNI + F E FEH KDA LTN K++ I
Sbjct: 6 DYVKKTGNILMERYQDAFSREDFEHNKDAVTELTNIESKNVRNRI 50
>sp|O17820|SRG17_CAEEL Serpentine receptor class gamma-17 (Protein srg-17)
Length = 320
Score = 30.8 bits (68), Expect = 3.8
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +3
Query: 543 LSLLLFVHLSGRIYL*MKLL*IDNYFCFSNMVFLLILCDLFMFALILIFEIFIGNKF 713
LS+ LF H+S L +L D + N F+L DLF +L+++IF G F
Sbjct: 34 LSVGLFCHIS----LLKIILISDRKYFKDNSFFVLFRADLFASTTLLLYDIFFGRIF 86
>sp|Q8K9I7|SYN_BUCAP Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS)
Length = 466
Score = 30.8 bits (68), Expect = 3.8
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Frame = +3
Query: 78 CLNLITYAFNILDTEKKYGNIDLMSSDYKFVSEVFEHL--KDAKEILTNPRRKSIE---- 239
C +L+ Y N + K Y + D+++ KF+S F + KDA +IL N ++K
Sbjct: 274 CKSLLKYCINDIKFLKNYIDNDIINRLKKFLSVNFIRINYKDAIDILLNSKKKFDNVVSF 333
Query: 240 ------EHITNPKRKCFHPPVPSDLAISIFIRDSTLILAAYLLEMNQSKRYELAGRITVD 401
EH K F PV I + L A+ + +N K+ A +D
Sbjct: 334 GVDLNAEHERFLVEKHFKAPV--------VIINYPKELKAFYMRLNDDKKTVAA----MD 381
Query: 402 CVVPWLSEVL 431
+VP + E++
Sbjct: 382 LLVPGIGELI 391
>sp|P0A850|TIG_ECOLI Trigger factor (TF)
sp|P0A852|TIG_SHIFL Trigger factor (TF)
sp|P0A851|TIG_ECO57 Trigger factor (TF)
Length = 432
Score = 30.4 bits (67), Expect = 5.0
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 114 DTEKKYGNIDLMSSDYKFVSEVFEHLKDAKEILTNPRRKSIEE 242
D E+ G I+ M+S Y+ EV E KE++ N R ++EE
Sbjct: 363 DEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEE 405
>sp|P15924|DESP_HUMAN Desmoplakin (DP) (250/210 kDa paraneoplastic pemphigus antigen)
Length = 2871
Score = 30.4 bits (67), Expect = 5.0
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 627 KSKNNYQSIIISFTNKFFHSDGQIKV-KTIAHFITRYTQEDTS 502
K +NNY IIS N+F + +I + KT H +T +EDTS
Sbjct: 1350 KVRNNYDEEIISLKNQF---ETEINITKTTIHQLTMQKEEDTS 1389
>sp|P66933|TIG_SALTI Trigger factor (TF)
sp|P66932|TIG_SALTY Trigger factor (TF)
Length = 432
Score = 30.4 bits (67), Expect = 5.0
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 114 DTEKKYGNIDLMSSDYKFVSEVFEHLKDAKEILTNPRRKSIEE 242
D E+ G I+ M+S Y+ EV E KE++ N R ++EE
Sbjct: 363 DEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEE 405
>sp|O74387|YNVC_SCHPO Hypothetical protein C3H7.12 in chromosome II
Length = 287
Score = 30.4 bits (67), Expect = 5.0
Identities = 26/130 (20%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Frame = +3
Query: 57 KLQQIQDCLNLITYAFNILDTEKKYGNIDLMSSDYKFVSEVFEHLKDAKEILTNPRR--- 227
+LQ+I + + ++ ++EK+ + S K + + + L + R
Sbjct: 125 ELQEILHAIVCLLHSIMQEESEKEEIPSNASSISLKSQNSIVSRTSNPFSCLNHSPRQIH 184
Query: 228 KSIEEHITNPKRKCFHPPVPSDLAISIFIRDSTLILAAYLLE-MNQSKRYELAGRITVDC 404
K++ H+ F PP+PS+LA+S I ++++ L + L N+ + ++
Sbjct: 185 KTVRNHL-------FSPPLPSNLALSFSISNASVCLHLFRLSGPNEVLESFAKNSVDIEM 237
Query: 405 VVPWLSEVLD 434
+ P++S+ +D
Sbjct: 238 LKPFVSQRID 247
>sp|Q5PFN3|TIG_SALPA Trigger factor (TF)
Length = 432
Score = 30.4 bits (67), Expect = 5.0
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 114 DTEKKYGNIDLMSSDYKFVSEVFEHLKDAKEILTNPRRKSIEE 242
D E+ G I+ M+S Y+ EV E KE++ N R ++EE
Sbjct: 363 DEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEE 405
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,252,302
Number of Sequences: 369166
Number of extensions: 1366863
Number of successful extensions: 3261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3261
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)