Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_O07
(926 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39498|Y13E_BPT4 Hypothetical 8.7 kDa protein in cd-pseT... 33 1.5
sp|P49955|S3B1_YEAST U2 snRNP component HSH155 32 3.3
sp|Q9PQB4|DPO3_UREPA DNA polymerase III polC-type (PolIII) 30 7.4
sp|P75346|Y129_MYCPN Hypothetical protein MPN129 (C09_orf149b) 30 7.4
sp|P32349|RPC3_YEAST DNA-directed RNA polymerase III 74 kDa... 30 7.4
sp|P87126|CWC2_SCHPO Pre-mRNA splicing factor cwc2 (Complex... 30 9.6
sp|P57662|ENGA_BUCAI GTP-binding protein engA 30 9.6
>sp|P39498|Y13E_BPT4 Hypothetical 8.7 kDa protein in cd-pseT intergenic region
Length = 76
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +3
Query: 492 HRLVLENYNEKIKTGSVFILKKVSIFSPSGNKYYLNITKSNIIEIISPGESD 647
+RL+L+ + EK+K + ++ KVS P + + T +++ I++PG+ D
Sbjct: 3 NRLLLKEFQEKVKLFAQELVNKVSERFPETSVRVITETPRSVLVIVNPGDGD 54
>sp|P49955|S3B1_YEAST U2 snRNP component HSH155
Length = 971
Score = 31.6 bits (70), Expect = 3.3
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +3
Query: 567 FSPSGNKYYLNITKSNIIEIISPGESDWRVNSQSLISKQEIETIVRECS----EIPQITF 734
F PS +KY+ ++ I+ ++ E R S L+ + T R S +TF
Sbjct: 136 FKPSDHKYFADVISKKPIDELNKDEKKERTLSMLLLKIKNGNTASRRTSMRILTDKAVTF 195
Query: 735 DPKSLFNEIKP 767
P+ +FN + P
Sbjct: 196 GPEMIFNRLLP 206
>sp|Q9PQB4|DPO3_UREPA DNA polymerase III polC-type (PolIII)
Length = 1442
Score = 30.4 bits (67), Expect = 7.4
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Frame = +3
Query: 627 ISPGESDWRVNSQSLISKQEIETIVRECSE-----IPQITFDPKSLF---------NEIK 764
+S GES W N+QSLI ++ V C + + + +PK+ F +IK
Sbjct: 1175 LSHGESVWLGNAQSLIKSGKLLKDVIACRDDIMTYLIRQNVEPKTAFLIMEDVRKGKKIK 1234
Query: 765 PHVPLPTNNQHKPQ--LNAQNKKKSIFLMTIWMNFLCHSWK 881
P + P+ + + NK K +F ++ H+WK
Sbjct: 1235 PEHQIILKELKVPEWYIESANKIKYMFPKAHATAYVMHAWK 1275
>sp|P75346|Y129_MYCPN Hypothetical protein MPN129 (C09_orf149b)
Length = 149
Score = 30.4 bits (67), Expect = 7.4
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 112 DICRRLPIINSILFRLITNFLKR--GSPNRRQMIPLATLV*MNMIILFLQPRLKILNL 279
DI + I+ ++ F + F + G P + +PL TLV + ++I+ L P L I NL
Sbjct: 6 DIYTKASIVEAVRFSFLNTFQLKELGLPIKEIAVPLGTLVFLFVVIITLIPLLIIGNL 63
>sp|P32349|RPC3_YEAST DNA-directed RNA polymerase III 74 kDa polypeptide (C74)
Length = 654
Score = 30.4 bits (67), Expect = 7.4
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +3
Query: 585 KYYLNITKSNIIEIISPGESDWRVNSQSLIS-KQEIETIVRECSEIPQI-TFDPKSLFNE 758
K+Y NI +++ + SD + SQ+ ++ K + I+ + +E+ QI T DPK+
Sbjct: 221 KHYKNIPRNSPL-------SDLKKRSQAKMNAKTDFAKIINKPNELSQILTVDPKTSLRI 273
Query: 759 IKPHVPLPTN 788
+KP V L N
Sbjct: 274 VKPTVSLTIN 283
>sp|P87126|CWC2_SCHPO Pre-mRNA splicing factor cwc2 (Complexed with cdc5 protein 2)
(Pre-mRNA-processing protein 3) (Cell cycle control
protein cwf2)
Length = 388
Score = 30.0 bits (66), Expect = 9.6
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Frame = +3
Query: 30 PSNFIVDSINFQNDLDNLKNRKFP---GPAGHLPKV------ANHQFHSISINNKFPEKR 182
P F++D +N + RK G G++P + H+ N+FP K
Sbjct: 275 PKQFLLDLEETKNGKSGNRKRKLELEFGLKGYVPSDDLLYADGANSVHNQLAANEFPNKS 334
Query: 183 QPQQATNDSTRDSCMNEYDN-FVPATQIEDSESWKKA 290
Q ++ +ND + E N FV + + D + K+A
Sbjct: 335 QSEEGSNDDHKSVTTTESQNKFVNSQILSDLQVAKQA 371
>sp|P57662|ENGA_BUCAI GTP-binding protein engA
Length = 453
Score = 30.0 bits (66), Expect = 9.6
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = +3
Query: 147 SISINNKFPEKRQPQQATNDSTRDSCMN----EYDNFVPATQIEDSESWKKAKEIIGRNC 314
S IN E+R T +T DS Y+N+ T I+ + + KK K+I
Sbjct: 200 STLINGILKEERMITSNTPGTTLDSISTPIKYNYENY---TLIDTAGASKKKKKI----- 251
Query: 315 WPEFQKYTIEKVLEMVEKPDGLL 383
+FQ+++I K L+ +EK + +L
Sbjct: 252 -NDFQRFSIIKTLQTIEKSNVIL 273
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,183,323
Number of Sequences: 369166
Number of extensions: 2315968
Number of successful extensions: 6306
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6302
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)