Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_O06
(259 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35202|THI80_YEAST Thiamine pyrophosphokinase (TPK) (Thi... 29 2.9
sp|Q71ZB1|HEM1_LISMF Glutamyl-tRNA reductase (GluTR) 28 6.5
sp|P51884|LUM_HUMAN Lumican precursor (Keratan sulfate prot... 28 8.5
>sp|P35202|THI80_YEAST Thiamine pyrophosphokinase (TPK) (Thiamine kinase)
Length = 319
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = -1
Query: 229 VHIQMVPNFLLHDVDVLMGR*FKYVLVNLMSLLKQ 125
+ I+ +PN+++ D+D L + +KY N ++++KQ
Sbjct: 85 LRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQ 119
>sp|Q71ZB1|HEM1_LISMF Glutamyl-tRNA reductase (GluTR)
Length = 435
Score = 28.1 bits (61), Expect = 6.5
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -1
Query: 214 VPNFLLHDVDVLMGR*FKYVLVNLMSLLKQLFIILELFKGFSSSVRN 74
+PNF L+D+D L G +V+ SL +Q I+LEL + VRN
Sbjct: 291 IPNFHLYDIDDLAG------VVSANSLERQR-IVLELENTIEAEVRN 330
>sp|P51884|LUM_HUMAN Lumican precursor (Keratan sulfate proteoglycan lumican) (KSPG
lumican)
Length = 338
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 21 KFYEKNINYSWILI*YQLFLTELEKPLNNSNIMNNCFSKLIKFTNTYLNHRPISTS 188
K +E + W+++ + L L NS I FSKL + ++NH ++ S
Sbjct: 84 KAFENVTDLQWLILDHNL--------LENSKIKGRVFSKLKQLKKLHINHNNLTES 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,990,195
Number of Sequences: 369166
Number of extensions: 344579
Number of successful extensions: 706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)