Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_O03
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51146|RAB4B_RAT Ras-related protein Rab-4B >gi|46577105... 41 0.001
sp|P61018|RAB4B_HUMAN Ras-related protein Rab-4B >gi|465776... 41 0.001
sp|P56371|RAB4A_MOUSE Ras-related protein Rab-4A 41 0.001
sp|P05714|RAB4A_RAT Ras-related protein Rab-4A 40 0.002
sp|Q68EK7|RAB4B_BRARE Ras-related protein Rab-4B 40 0.002
sp|Q6PHI9|RAB4A_BRARE Ras-related protein Rab-4A 40 0.002
sp|P20338|RAB4A_HUMAN Ras-related protein Rab-4A 40 0.002
sp|P35292|RAB17_MOUSE Ras-related protein Rab-17 34 0.14
sp|Q9H0T7|RAB17_HUMAN Ras-related protein Rab-17 34 0.14
sp|Q9GP33|RAB4A_ECHMU Probable Ras-related protein Rab-4A 33 0.42
>sp|P51146|RAB4B_RAT Ras-related protein Rab-4B
sp|Q91ZR1|RAB4B_MOUSE Ras-related protein Rab-4B
Length = 213
Score = 41.2 bits (95), Expect = 0.001
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = -1
Query: 152 NIYLFICLDHQGGNGFGNKIDKSEEERQVSFIEGTQFAQENELMFIDT 9
NI + +C GNK D + ER+V+F+E ++FAQENELMF++T
Sbjct: 113 NIVVILC---------GNKKDL-DPEREVTFLEASRFAQENELMFLET 150
>sp|P61018|RAB4B_HUMAN Ras-related protein Rab-4B
sp|P61017|RAB4B_CANFA Ras-related protein Rab-4B
Length = 213
Score = 41.2 bits (95), Expect = 0.001
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = -1
Query: 152 NIYLFICLDHQGGNGFGNKIDKSEEERQVSFIEGTQFAQENELMFIDT 9
NI + +C GNK D + ER+V+F+E ++FAQENELMF++T
Sbjct: 113 NIVVILC---------GNKKDL-DPEREVTFLEASRFAQENELMFLET 150
>sp|P56371|RAB4A_MOUSE Ras-related protein Rab-4A
Length = 213
Score = 41.2 bits (95), Expect = 0.001
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = -1
Query: 152 NIYLFICLDHQGGNGFGNKIDKSEEERQVSFIEGTQFAQENELMFIDT 9
NI L +C GNK D + +R+V+F+E ++FAQENELMF++T
Sbjct: 113 NIVLILC---------GNKKDL-DADREVTFLEASRFAQENELMFLET 150
>sp|P05714|RAB4A_RAT Ras-related protein Rab-4A
Length = 213
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = -1
Query: 152 NIYLFICLDHQGGNGFGNKIDKSEEERQVSFIEGTQFAQENELMFIDT 9
NI + +C GNK D + +R+V+F+E ++FAQENELMF++T
Sbjct: 113 NIVIILC---------GNKKDL-DADREVTFLEASRFAQENELMFLET 150
>sp|Q68EK7|RAB4B_BRARE Ras-related protein Rab-4B
Length = 213
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = -1
Query: 152 NIYLFICLDHQGGNGFGNKIDKSEEERQVSFIEGTQFAQENELMFIDT 9
NI + +C GNK D + +R+V+F+E ++FAQENELMF++T
Sbjct: 113 NIVIILC---------GNKKDL-DADREVTFLEASRFAQENELMFLET 150
>sp|Q6PHI9|RAB4A_BRARE Ras-related protein Rab-4A
Length = 213
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = -1
Query: 152 NIYLFICLDHQGGNGFGNKIDKSEEERQVSFIEGTQFAQENELMFIDT 9
NI + +C GNK D + +R+V+F+E ++FAQENELMF++T
Sbjct: 113 NIVIILC---------GNKKDL-DADREVTFLEASRFAQENELMFLET 150
>sp|P20338|RAB4A_HUMAN Ras-related protein Rab-4A
Length = 213
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = -1
Query: 152 NIYLFICLDHQGGNGFGNKIDKSEEERQVSFIEGTQFAQENELMFIDT 9
NI + +C GNK D + +R+V+F+E ++FAQENELMF++T
Sbjct: 113 NIVIILC---------GNKKDL-DADREVTFLEASRFAQENELMFLET 150
>sp|P35292|RAB17_MOUSE Ras-related protein Rab-17
Length = 214
Score = 34.3 bits (77), Expect = 0.14
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -1
Query: 104 GNKIDKSEEERQVSFIEGTQFAQENELMFIDT 9
GNK D EE R+V+F EG +FA+ L+F++T
Sbjct: 131 GNKTDLGEE-REVTFQEGKEFAESKSLLFMET 161
>sp|Q9H0T7|RAB17_HUMAN Ras-related protein Rab-17
Length = 212
Score = 34.3 bits (77), Expect = 0.14
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = -1
Query: 104 GNKIDKSEEERQVSFIEGTQFAQENELMFIDT 9
GNK D S+E R+V+F EG +FA +L+F++T
Sbjct: 131 GNKTDLSQE-REVTFQEGKEFADSQKLLFMET 161
>sp|Q9GP33|RAB4A_ECHMU Probable Ras-related protein Rab-4A
Length = 223
Score = 32.7 bits (73), Expect = 0.42
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -1
Query: 104 GNKIDKSEEERQVSFIEGTQFAQENELMFIDT 9
GNK D + + QV+ E FAQEN L FI+T
Sbjct: 121 GNKKDLRDTDGQVTHWEANTFAQENGLQFIET 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,140,423
Number of Sequences: 369166
Number of extensions: 878568
Number of successful extensions: 1668
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1668
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)