Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_N18
(819 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O75494|FUSIP_HUMAN FUS-interacting serine-arginine-rich ... 81 3e-15
sp|Q8WXF0|SRR35_HUMAN 35 kDa SR repressor protein (SRrp35) 80 5e-15
sp|P27476|NSR1_YEAST Nuclear localization sequence binding ... 57 8e-08
sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich... 57 8e-08
sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2... 57 8e-08
sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich... 57 8e-08
sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/ser... 55 2e-07
sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 pro... 53 9e-07
sp|P62997|TRA2B_RAT Arginine/serine-rich splicing factor 10... 51 4e-06
sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/ser... 50 6e-06
>sp|O75494|FUSIP_HUMAN FUS-interacting serine-arginine-rich protein 1 (TLS-associated
protein with Ser-Arg repeats) (TLS-associated protein
with SR repeats) (TASR) (TLS-associated serine-arginine
protein) (TLS-associated SR protein) (40 kDa
SR-repressor protein) (SRrp40) (Splicing factor SRp38)
sp|Q9R0U0|FUSIP_MOUSE FUS-interacting serine-arginine-rich protein 1 (TLS-associated
protein with Ser-Arg repeats) (TLS-associated protein
with SR repeats) (TASR) (TLS-associated serine-arginine
protein) (TLS-associated SR protein) (Neural-specific SR
protein) (Neural-salient serine/arginine-rich protein)
Length = 262
Score = 81.3 bits (199), Expect = 3e-15
Identities = 38/84 (45%), Positives = 59/84 (70%)
Frame = +1
Query: 331 RRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSL 510
R ++L+R FGRYG IV +P+D+Y+ P+GFA+VQFED+RDAE++ L I R +
Sbjct: 22 RSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQI 81
Query: 511 RLEFATGTKKTPDEMRTVTRRGRS 582
++FA G +KTP++M+ + GR+
Sbjct: 82 EIQFAQGDRKTPNQMK--AKEGRN 103
>sp|Q8WXF0|SRR35_HUMAN 35 kDa SR repressor protein (SRrp35)
Length = 261
Score = 80.5 bits (197), Expect = 5e-15
Identities = 38/86 (44%), Positives = 58/86 (67%)
Frame = +1
Query: 331 RRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSL 510
R ++L+R FGRYG IV +P+D+Y+ P+GFA+VQFED+RDAE++ L + R +
Sbjct: 22 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQI 81
Query: 511 RLEFATGTKKTPDEMRTVTRRGRSNS 588
++FA G +KTP +M++ R S S
Sbjct: 82 EIQFAQGDRKTPGQMKSKERHPCSPS 107
>sp|P27476|NSR1_YEAST Nuclear localization sequence binding protein (P67)
Length = 414
Score = 56.6 bits (135), Expect = 8e-08
Identities = 25/68 (36%), Positives = 43/68 (63%)
Frame = +1
Query: 325 NDRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKR 504
N RD + +F ++G +V+ +P + PKGF +VQF ++ DA+++ D LQG I R
Sbjct: 277 NADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNR 336
Query: 505 SLRLEFAT 528
+RL+F++
Sbjct: 337 PVRLDFSS 344
Score = 33.5 bits (75), Expect = 0.72
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +1
Query: 343 LKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRLEF 522
LK+ F G ++ A + + + +G+ +V FE+ AE++ +QG I R + +
Sbjct: 184 LKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDM 243
Query: 523 AT 528
+T
Sbjct: 244 ST 245
>sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 56.6 bits (135), Expect = 8e-08
Identities = 26/63 (41%), Positives = 40/63 (63%)
Frame = +1
Query: 337 DELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRL 516
D L+R+F +YG + +P D Y+ +GFAFV+F D RDAE++ D + G + R LR+
Sbjct: 28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 87
Query: 517 EFA 525
+ A
Sbjct: 88 QMA 90
>sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 56.6 bits (135), Expect = 8e-08
Identities = 26/63 (41%), Positives = 40/63 (63%)
Frame = +1
Query: 337 DELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRL 516
D L+R+F +YG + +P D Y+ +GFAFV+F D RDAE++ D + G + R LR+
Sbjct: 28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 87
Query: 517 EFA 525
+ A
Sbjct: 88 QMA 90
>sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
Length = 221
Score = 56.6 bits (135), Expect = 8e-08
Identities = 26/63 (41%), Positives = 40/63 (63%)
Frame = +1
Query: 337 DELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRL 516
D L+R+F +YG + +P D Y+ +GFAFV+F D RDAE++ D + G + R LR+
Sbjct: 28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 87
Query: 517 EFA 525
+ A
Sbjct: 88 QMA 90
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 (RNA-binding
protein srp-2) (CeSC35)
Length = 196
Score = 55.5 bits (132), Expect = 2e-07
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Frame = +1
Query: 337 DELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSLRL 516
++L+R F RYG+I +P D YS KGF FV+F + RDAE + DR G + R LR+
Sbjct: 33 NDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
Query: 517 EFATGTKKTPD---------EMRTVTRRGRSNSP 591
A + + + R+ + R RS SP
Sbjct: 93 TLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRSP 126
>sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 protein)
Length = 303
Score = 53.1 bits (126), Expect = 9e-07
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = +1
Query: 331 RRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSL 510
R E++ +F +YG +V L V P G+AFV+F+D RDAE++ GY L
Sbjct: 19 REREVEDLFSKYGPVVQIDLKVPPR---PPGYAFVEFDDARDAEDAIHGRDGYDFDGHRL 75
Query: 511 RLEFATGTKKTPDEMR 558
R+E A G +++ D+ R
Sbjct: 76 RVELAHGGRRSSDDTR 91
>sp|P62997|TRA2B_RAT Arginine/serine-rich splicing factor 10 (Transformer-2-beta)
(HTRA2-beta) (Transformer 2 protein homolog) (RA301)
sp|P62996|TRA2B_MOUSE Arginine/serine-rich splicing factor 10 (Transformer-2-beta)
(HTRA2-beta) (Transformer 2 protein homolog)
(Silica-induced gene 41 protein) (SIG-41)
sp|P62995|TRA2B_HUMAN Arginine/serine-rich splicing factor 10 (Transformer-2-beta)
(HTRA2-beta) (Transformer 2 protein homolog)
Length = 288
Score = 50.8 bits (120), Expect = 4e-06
Identities = 25/70 (35%), Positives = 43/70 (61%)
Frame = +1
Query: 316 LY*NDRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRI 495
LY +R +L+ +F +YG I ++ D S +GFAFV FE++ DA+E+ +R G +
Sbjct: 127 LYTTER--DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184
Query: 496 GKRSLRLEFA 525
R +R++F+
Sbjct: 185 DGRRIRVDFS 194
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 (CeSF2)
(CeSF2/ASF)
Length = 258
Score = 50.4 bits (119), Expect = 6e-06
Identities = 29/67 (43%), Positives = 37/67 (55%)
Frame = +1
Query: 331 RRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRLQGYRIGKRSL 510
R E++ IF +YG I VD SG FAFV+FED RDAE++ GY R +
Sbjct: 21 REKEVEDIFHKYGRIKY----VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRI 76
Query: 511 RLEFATG 531
R+EF G
Sbjct: 77 RVEFTRG 83
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,354,698
Number of Sequences: 369166
Number of extensions: 1287301
Number of successful extensions: 3371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3359
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)