Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_N01
(811 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P04936|POLG_HRV2 Genome polyprotein [Contains: Coat prot... 35 0.24
sp|O43918|AIRE_HUMAN Autoimmune regulator (Autoimmune polye... 33 0.71
sp|P36304|POLR_KYMVJ RNA replicase polyprotein 32 2.1
sp|P36335|NCA12_XENLA Neural cell adhesion molecule 1-B pre... 31 3.5
sp|P16170|NCA11_XENLA Neural cell adhesion molecule 1-A pre... 31 4.6
sp|P06100|NOT2_YEAST General negative regulator of transcri... 31 4.6
sp|Q8LFT2|DRP3B_ARATH Dynamin-related protein 3B (Dynamin-l... 30 6.0
sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subuni... 30 7.8
sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subuni... 30 7.8
sp|Q6BQ20|ATG13_DEBHA Autophagy-related protein 13 30 7.8
>sp|P04936|POLG_HRV2 Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
(P1D); Picornain 2A (Core protein P2A); Core protein
P2B; Core protein P2C; Core protein P3A; Genome-linked
protein VPg (P3B); Picornain 3C (Protease 3C) (P3C);
RNA-directed RNA polymerase (P3D)]
Length = 2150
Score = 35.0 bits (79), Expect = 0.24
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +1
Query: 13 KFWLTRDSKGVNEPTVHPNLERGSYIVWDYEKAQRVTKILT-VYYKDLENVTPATTKSLF 189
K L G+ EPT + G++++WD ++ ++ + N +P + S +
Sbjct: 458 KLLLAYTPPGIAEPTTRKDAMLGTHVIWDVGLQSTISMVVPWISASHYRNTSPGRSTSGY 517
Query: 190 PFCYNSPFIKRSAVNSSAIPPPQLPPTGR 276
C+ + + PPQ PPT R
Sbjct: 518 ITCW---------YQTRLVIPPQTPPTAR 537
>sp|O43918|AIRE_HUMAN Autoimmune regulator (Autoimmune polyendocrinopathy candidiasis
ectodermal dystrophy protein) (APECED protein)
Length = 545
Score = 33.5 bits (75), Expect = 0.71
Identities = 28/113 (24%), Positives = 53/113 (46%)
Frame = +1
Query: 94 WDYEKAQRVTKILTVYYKDLENVTPATTKSLFPFCYNSPFIKRSAVNSSAIPPPQLPPTG 273
++ E+ R+ IL + KD++ P + K AV + +PPP+LP
Sbjct: 85 YNLERYGRLQPILDSFPKDVDLSQPRKGR------------KPPAVPKALVPPPRLPTKR 132
Query: 274 RTNQKNLATFLQNPSAAASVEARLLNNPISQNFSQPDQMMTSTASQIRVQINN 432
+ +++ A +A A++ R +P SQ ++P + S+A Q R+ + N
Sbjct: 133 KASEEARA------AAPAALTPRGTASPGSQLKAKPPKKPESSAEQQRLPLGN 179
>sp|P36304|POLR_KYMVJ RNA replicase polyprotein
Length = 1874
Score = 32.0 bits (71), Expect = 2.1
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = +1
Query: 202 NSPFIKRSAVNSSAIPPPQLPPTGRTNQKNLATFLQNPSAAASVEARLLNNP------IS 363
+SPF+ +N SA+PPPQ PT T + L P V++ L+ +P +S
Sbjct: 722 HSPFLSDGQLNYSALPPPQ-DPTNTT-----LSLLPEPKPPTEVQSPLMADPTCVGPAVS 775
Query: 364 QNFSQPDQMMTSTAS 408
+ P +TAS
Sbjct: 776 FSSLYPRDFFPNTAS 790
>sp|P36335|NCA12_XENLA Neural cell adhesion molecule 1-B precursor
Length = 1092
Score = 31.2 bits (69), Expect = 3.5
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +1
Query: 151 LENVTPATTKS-----LFPFCYNSPFIKRSAVNSSAIPPPQLPPTGRTNQKNLAT 300
L +VT TT S F NSP + + + SS PPP P T Q AT
Sbjct: 816 LPSVTTVTTNSDTITETFATAQNSPTSETTTLTSSTAPPPSTAPDSNTVQSVQAT 870
>sp|P16170|NCA11_XENLA Neural cell adhesion molecule 1-A precursor
Length = 1088
Score = 30.8 bits (68), Expect = 4.6
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +1
Query: 151 LENVTPATTKS-----LFPFCYNSPFIKRSAVNSSAIPPPQLPPTGRTNQKNLAT 300
L +VT TT S F NSP + + + SS PPP P T Q AT
Sbjct: 812 LPSVTTVTTNSDTITETFATAQNSPTSETTTLTSSTAPPPTTAPDSNTIQSIQAT 866
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2
Length = 191
Score = 30.8 bits (68), Expect = 4.6
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 1 HKRDKFWLTRDSKGVNEPTVHPN--LERGSYIVWDYEKAQRVTKILTVYY 144
HK K WLT+D + EP V + ERGSY+ +D ++ ++ + ++Y
Sbjct: 140 HKTLKAWLTKDP--MMEPIVSADGLSERGSYVFFDPQRWEKCQRDFLLFY 187
>sp|Q8LFT2|DRP3B_ARATH Dynamin-related protein 3B (Dynamin-like protein 2b)
Length = 780
Score = 30.4 bits (67), Expect = 6.0
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 7/122 (5%)
Frame = +1
Query: 55 TVHPNLERGSYIVWDYEKAQRVTKILTVYYKDLENVTPATTKSLFPFCYNSPFIKRSA-- 228
T HPN G+ V + + ++I + + V P T S F+ R A
Sbjct: 509 TSHPNFIGGTKAVEQAMQTVKSSRIPHPVARPRDTVEPERTASSGSQIKTRSFLGRQANG 568
Query: 229 -VNSSAIPPP----QLPPTGRTNQKNLATFLQNPSAAASVEARLLNNPISQNFSQPDQMM 393
+ A+P + P G T+ ++ + A+ + LLN P S+ + Q +
Sbjct: 569 IITDQAVPTAADAERPAPAGSTSWSGFSSIFRGSDGQAAAKNNLLNKPFSETTQEVYQNL 628
Query: 394 TS 399
++
Sbjct: 629 ST 630
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 (CCR4-associated factor 3)
Length = 753
Score = 30.0 bits (66), Expect = 7.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 HKRDKFWLTRDSKGVNEPTVHPNLERGSYIVWDYEK-AQRVTKILTVYYKDLEN 159
H + W R + T+ E+G+YI +DYEK QR + T Y+ LE+
Sbjct: 699 HTKYMMWFQRHEE---PKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLED 749
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 (CCR4-associated factor 3)
Length = 751
Score = 30.0 bits (66), Expect = 7.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 HKRDKFWLTRDSKGVNEPTVHPNLERGSYIVWDYEK-AQRVTKILTVYYKDLEN 159
H + W R + T+ E+G+YI +DYEK QR + T Y+ LE+
Sbjct: 697 HTKYMMWFQRHEE---PKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLED 747
>sp|Q6BQ20|ATG13_DEBHA Autophagy-related protein 13
Length = 837
Score = 30.0 bits (66), Expect = 7.8
Identities = 28/107 (26%), Positives = 43/107 (40%)
Frame = +1
Query: 112 QRVTKILTVYYKDLENVTPATTKSLFPFCYNSPFIKRSAVNSSAIPPPQLPPTGRTNQKN 291
Q VT+ + K N TP ++ P I V S + PP G ++ +
Sbjct: 375 QTVTEDSPSHNKPSANTTPIVSQR--------PTINPFKVGSISTSPPATTNFGGSSLER 426
Query: 292 LATFLQNPSAAASVEARLLNNPISQNFSQPDQMMTSTASQIRVQINN 432
+ N SA+ + A +L NP S S T+T + I + NN
Sbjct: 427 KVSITSNKSASNASLAAMLRNPRSSTSS------TNTTANIPIANNN 467
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,979,229
Number of Sequences: 369166
Number of extensions: 1419338
Number of successful extensions: 4076
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4071
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)