Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_M10
(726 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UGU0|TCF20_HUMAN Transcription factor 20 (Stromelysin ... 35 0.27
sp|Q9EPQ8|TCF20_MOUSE Transcription factor 20 (Stromelysin ... 32 1.7
sp|Q6CFS5|CBK1_YARLI Serine/threonine-protein kinase CBK1 32 2.3
sp|P46963|CTK3_YEAST CTD kinase gamma subunit (CTD kinase 3... 31 3.9
sp|Q12527|ATG11_YEAST Autophagy-related protein 11 (Cytopla... 30 5.0
sp|O23346|HIS7B_ARATH Probable imidazoleglycerol-phosphate ... 30 6.6
sp|Q9K7G2|Y3399_BACHD Hypothetical protein BH3399 30 6.6
sp|P53131|PRP43_YEAST Pre-mRNA splicing factor RNA helicase... 30 8.6
>sp|Q9UGU0|TCF20_HUMAN Transcription factor 20 (Stromelysin 1 PDGF-responsive
element-binding protein) (Spre-binding protein) (Nuclear
factor SPBP) (AR1)
Length = 1960
Score = 34.7 bits (78), Expect = 0.27
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 353 HDVISNYSPADSVSTQMRRIERRLDGMMDYKFPEPEYFSDLRKNL 487
HD +S+Y P DS T MRR+ R+ G + P + D + L
Sbjct: 972 HDSLSDYGPQDSRPTPMRRVPGRVGGREGMRGRSPSQYHDFAEKL 1016
>sp|Q9EPQ8|TCF20_MOUSE Transcription factor 20 (Stromelysin 1 PDGF-responsive
element-binding protein) (Spre-binding protein) (Nuclear
factor SPBP)
Length = 1983
Score = 32.0 bits (71), Expect = 1.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 353 HDVISNYSPADSVSTQMRRIERRLDGMMDYKFPEPEYFSDLRKNL 487
HD IS+Y P DS ST MRR+ R+ + + D + L
Sbjct: 1000 HDSISDYGPQDSRSTPMRRVPGRVGSRETMRGRSSSQYHDFAEKL 1044
>sp|Q6CFS5|CBK1_YARLI Serine/threonine-protein kinase CBK1
Length = 588
Score = 31.6 bits (70), Expect = 2.3
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Frame = +2
Query: 221 RYRVLNSTERQITSHHRPGFVRCSSERPGEIS----DHQQFTSRQRKHHDVISNYSPADS 388
R R N+T Q+ S + G V+ + ER S +Q TS +R++ V++NY ++
Sbjct: 136 RDRAHNTT--QVISTYYKGIVQHAIERHQRRSAAEASVEQATSEERRNR-VLTNYGKKET 192
Query: 389 VSTQMRRIERRLDGMMDYKFPEPEYFSDLRKNLSSINNRLATHRNMIDK 535
+MRR L+ + K F ++R N ++ + M+ K
Sbjct: 193 AYLRMRRTRMALEDFVTVKVIGKGAFGEVRLVQKRDNGKIYAMKTMLKK 241
>sp|P46963|CTK3_YEAST CTD kinase gamma subunit (CTD kinase 32 kDa subunit) (CTDK-I gamma
subunit)
Length = 296
Score = 30.8 bits (68), Expect = 3.9
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = +2
Query: 77 RSRKIANDYSNEYDRVASASKNADLRALSLFDSAINNSSIQSPH---QPRRRYRVLNSTE 247
++ + DY R S K+ DL+ L+ F ++++ +P QP +L+ E
Sbjct: 173 KTERTTKDYKESLQRTESLLKDRDLKKLAFFQQFNSDTTAINPDLQTQPTNANILLHRME 232
Query: 248 RQITSHHRPGFVRCSSERP-GEISDHQQFTS 337
H R ERP +I D +F S
Sbjct: 233 ADRELHKRSKETSWYIERPSNDILDESEFKS 263
>sp|Q12527|ATG11_YEAST Autophagy-related protein 11 (Cytoplasm to vacuole targeting protein
9)
Length = 1178
Score = 30.4 bits (67), Expect = 5.0
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = +2
Query: 395 TQMRRIERRLDGMMDYKFPEPEYFSDLRKNLSSINNRLATHRNMIDKYSSVDMGTVVPL 571
T + R +R + +++ + F R+N++S+ + ++ ++ +SSVD+ T PL
Sbjct: 1018 TLLERFQREKVTLRNFQIGDLALFLPTRENVNSVGSMSSSTSSLSSSFSSVDLSTPPPL 1076
>sp|O23346|HIS7B_ARATH Probable imidazoleglycerol-phosphate dehydratase 2 (IGPD 2)
Length = 259
Score = 30.0 bits (66), Expect = 6.6
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 188 SSIQSPHQPRRRYRVLNSTERQITSHHRPGFVRCSSERPGE 310
+SI S H P R+ V+NS S HRP + C+S PG+
Sbjct: 26 TSIASSHPPPPRFLVMNS-----QSQHRPS-ISCASPPPGD 60
>sp|Q9K7G2|Y3399_BACHD Hypothetical protein BH3399
Length = 329
Score = 30.0 bits (66), Expect = 6.6
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 407 RIERRLDGMMDYKFPEPEYFSDLRKNLSSI--NNRLATHRN 523
R+ R +D DY EP Y DLRKNL S+ N RL+ +N
Sbjct: 289 RLLRSVD--KDYSKEEPGYLMDLRKNLVSLINNYRLSFEQN 327
>sp|P53131|PRP43_YEAST Pre-mRNA splicing factor RNA helicase PRP43 (Helicase JA1)
Length = 767
Score = 29.6 bits (65), Expect = 8.6
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 344 RKHHDVISNYSPADSVSTQMRRIERRLD---GMMDYKFPEPEYFSDLRKNLSS 493
R H+ + S AD++ +Q+ R+ R + DY+ P+YF ++RK L+S
Sbjct: 604 RDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYE--SPKYFDNIRKALAS 654
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,489,738
Number of Sequences: 369166
Number of extensions: 1308210
Number of successful extensions: 3310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3310
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6510836890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)