Planarian EST Database


Dr_sW_015_M10

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_015_M10
         (726 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UGU0|TCF20_HUMAN  Transcription factor 20 (Stromelysin ...    35   0.27 
sp|Q9EPQ8|TCF20_MOUSE  Transcription factor 20 (Stromelysin ...    32   1.7  
sp|Q6CFS5|CBK1_YARLI  Serine/threonine-protein kinase CBK1         32   2.3  
sp|P46963|CTK3_YEAST  CTD kinase gamma subunit (CTD kinase 3...    31   3.9  
sp|Q12527|ATG11_YEAST  Autophagy-related protein 11 (Cytopla...    30   5.0  
sp|O23346|HIS7B_ARATH  Probable imidazoleglycerol-phosphate ...    30   6.6  
sp|Q9K7G2|Y3399_BACHD  Hypothetical protein BH3399                 30   6.6  
sp|P53131|PRP43_YEAST  Pre-mRNA splicing factor RNA helicase...    30   8.6  
>sp|Q9UGU0|TCF20_HUMAN Transcription factor 20 (Stromelysin 1 PDGF-responsive
            element-binding protein) (Spre-binding protein) (Nuclear
            factor SPBP) (AR1)
          Length = 1960

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 353  HDVISNYSPADSVSTQMRRIERRLDGMMDYKFPEPEYFSDLRKNL 487
            HD +S+Y P DS  T MRR+  R+ G    +   P  + D  + L
Sbjct: 972  HDSLSDYGPQDSRPTPMRRVPGRVGGREGMRGRSPSQYHDFAEKL 1016
>sp|Q9EPQ8|TCF20_MOUSE Transcription factor 20 (Stromelysin 1 PDGF-responsive
            element-binding protein) (Spre-binding protein) (Nuclear
            factor SPBP)
          Length = 1983

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 353  HDVISNYSPADSVSTQMRRIERRLDGMMDYKFPEPEYFSDLRKNL 487
            HD IS+Y P DS ST MRR+  R+      +      + D  + L
Sbjct: 1000 HDSISDYGPQDSRSTPMRRVPGRVGSRETMRGRSSSQYHDFAEKL 1044
>sp|Q6CFS5|CBK1_YARLI Serine/threonine-protein kinase CBK1
          Length = 588

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
 Frame = +2

Query: 221 RYRVLNSTERQITSHHRPGFVRCSSERPGEIS----DHQQFTSRQRKHHDVISNYSPADS 388
           R R  N+T  Q+ S +  G V+ + ER    S      +Q TS +R++  V++NY   ++
Sbjct: 136 RDRAHNTT--QVISTYYKGIVQHAIERHQRRSAAEASVEQATSEERRNR-VLTNYGKKET 192

Query: 389 VSTQMRRIERRLDGMMDYKFPEPEYFSDLRKNLSSINNRLATHRNMIDK 535
              +MRR    L+  +  K      F ++R      N ++   + M+ K
Sbjct: 193 AYLRMRRTRMALEDFVTVKVIGKGAFGEVRLVQKRDNGKIYAMKTMLKK 241
>sp|P46963|CTK3_YEAST CTD kinase gamma subunit (CTD kinase 32 kDa subunit) (CTDK-I gamma
           subunit)
          Length = 296

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
 Frame = +2

Query: 77  RSRKIANDYSNEYDRVASASKNADLRALSLFDSAINNSSIQSPH---QPRRRYRVLNSTE 247
           ++ +   DY     R  S  K+ DL+ L+ F    ++++  +P    QP     +L+  E
Sbjct: 173 KTERTTKDYKESLQRTESLLKDRDLKKLAFFQQFNSDTTAINPDLQTQPTNANILLHRME 232

Query: 248 RQITSHHRPGFVRCSSERP-GEISDHQQFTS 337
                H R        ERP  +I D  +F S
Sbjct: 233 ADRELHKRSKETSWYIERPSNDILDESEFKS 263
>sp|Q12527|ATG11_YEAST Autophagy-related protein 11 (Cytoplasm to vacuole targeting protein
            9)
          Length = 1178

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/59 (23%), Positives = 32/59 (54%)
 Frame = +2

Query: 395  TQMRRIERRLDGMMDYKFPEPEYFSDLRKNLSSINNRLATHRNMIDKYSSVDMGTVVPL 571
            T + R +R    + +++  +   F   R+N++S+ +  ++  ++   +SSVD+ T  PL
Sbjct: 1018 TLLERFQREKVTLRNFQIGDLALFLPTRENVNSVGSMSSSTSSLSSSFSSVDLSTPPPL 1076
>sp|O23346|HIS7B_ARATH Probable imidazoleglycerol-phosphate dehydratase 2 (IGPD 2)
          Length = 259

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 188 SSIQSPHQPRRRYRVLNSTERQITSHHRPGFVRCSSERPGE 310
           +SI S H P  R+ V+NS      S HRP  + C+S  PG+
Sbjct: 26  TSIASSHPPPPRFLVMNS-----QSQHRPS-ISCASPPPGD 60
>sp|Q9K7G2|Y3399_BACHD Hypothetical protein BH3399
          Length = 329

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 407 RIERRLDGMMDYKFPEPEYFSDLRKNLSSI--NNRLATHRN 523
           R+ R +D   DY   EP Y  DLRKNL S+  N RL+  +N
Sbjct: 289 RLLRSVD--KDYSKEEPGYLMDLRKNLVSLINNYRLSFEQN 327
>sp|P53131|PRP43_YEAST Pre-mRNA splicing factor RNA helicase PRP43 (Helicase JA1)
          Length = 767

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +2

Query: 344 RKHHDVISNYSPADSVSTQMRRIERRLD---GMMDYKFPEPEYFSDLRKNLSS 493
           R H+    + S AD++ +Q+ R+  R +      DY+   P+YF ++RK L+S
Sbjct: 604 RDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYE--SPKYFDNIRKALAS 654
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,489,738
Number of Sequences: 369166
Number of extensions: 1308210
Number of successful extensions: 3310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3310
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6510836890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)