Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_M04
(237 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9U505|ATP9_MANSE ATP synthase lipid-binding protein, mi... 86 2e-17
sp|P56384|AT5G3_MOUSE ATP synthase lipid-binding protein, m... 83 2e-16
sp|Q06056|AT5G2_SHEEP ATP synthase lipid-binding protein, m... 83 2e-16
sp|P17605|AT5G1_SHEEP ATP synthase lipid-binding protein, m... 83 2e-16
sp|Q71S46|AT5G3_RAT ATP synthase lipid-binding protein, mit... 83 2e-16
sp|Q06646|AT5G2_RAT ATP synthase lipid-binding protein, mit... 83 2e-16
sp|Q06645|AT5G1_RAT ATP synthase lipid-binding protein, mit... 83 2e-16
sp|Q06055|AT5G2_HUMAN ATP synthase lipid-binding protein, m... 83 2e-16
sp|P05496|AT5G1_HUMAN ATP synthase lipid-binding protein, m... 83 2e-16
sp|P07926|AT5G2_BOVIN ATP synthase lipid-binding protein, m... 83 2e-16
>sp|Q9U505|ATP9_MANSE ATP synthase lipid-binding protein, mitochondrial precursor (ATPase
protein 9) (ATPase subunit C)
Length = 131
Score = 86.3 bits (212), Expect = 2e-17
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = +2
Query: 2 SLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYAF 136
SL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLMMAFL+L+AF
Sbjct: 87 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 131
>sp|P56384|AT5G3_MOUSE ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 83.2 bits (204), Expect = 2e-16
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +2
Query: 2 SLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 133
SL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 97 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 140
>sp|Q06056|AT5G2_SHEEP ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 143
Score = 83.2 bits (204), Expect = 2e-16
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +2
Query: 2 SLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 133
SL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 99 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 142
>sp|P17605|AT5G1_SHEEP ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P1) (ATPase protein 9) (ATPase
subunit C)
Length = 136
Score = 83.2 bits (204), Expect = 2e-16
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +2
Query: 2 SLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 133
SL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 92 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 135
>sp|Q71S46|AT5G3_RAT ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
sp|P48201|AT5G3_HUMAN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
Length = 142
Score = 83.2 bits (204), Expect = 2e-16
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +2
Query: 2 SLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 133
SL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 98 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 141
>sp|Q06646|AT5G2_RAT ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 83.2 bits (204), Expect = 2e-16
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +2
Query: 2 SLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 133
SL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 97 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 140
>sp|Q06645|AT5G1_RAT ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P1) (ATPase protein 9) (ATPase
subunit C)
Length = 136
Score = 83.2 bits (204), Expect = 2e-16
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +2
Query: 2 SLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 133
SL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 92 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 135
>sp|Q06055|AT5G2_HUMAN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 83.2 bits (204), Expect = 2e-16
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +2
Query: 2 SLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 133
SL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 97 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 140
>sp|P05496|AT5G1_HUMAN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P1) (ATPase protein 9) (ATPase
subunit C)
Length = 136
Score = 83.2 bits (204), Expect = 2e-16
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +2
Query: 2 SLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 133
SL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 92 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 135
>sp|P07926|AT5G2_BOVIN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 143
Score = 83.2 bits (204), Expect = 2e-16
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +2
Query: 2 SLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 133
SL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 99 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 142
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,688,168
Number of Sequences: 369166
Number of extensions: 416377
Number of successful extensions: 1775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 68,354,980
effective HSP length: 49
effective length of database: 59,302,965
effective search space used: 1719785985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)