Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_M03
(787 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y7J8|YGL1_SCHPO Hypothetical protein C216.01c in chrom... 34 0.52
sp|P53159|YGH5_YEAST Hypothetical 44.6 kDa protein in RPL7A... 33 1.2
sp|Q6RET7|CCAMK_MEDTR Calcium and calcium/calmodulin-depend... 31 3.4
sp|P51022|PNT1_DROME ETS-like protein pointed, isoform P1 (... 30 5.7
sp|O88746|TOM1_MOUSE Target of Myb protein 1 30 9.8
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 30 9.8
>sp|Q9Y7J8|YGL1_SCHPO Hypothetical protein C216.01c in chromosome II
Length = 836
Score = 33.9 bits (76), Expect = 0.52
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 14 LLNENRQYNMLNSAILELFEFIRTENITCLINNVIENHWDILQHHKYVNTFQTL 175
+L Q N++NSA LE FEF+R+E ++ + +N+ L+ ++TF L
Sbjct: 629 MLKVKDQTNLVNSAALEFFEFLRSEGSEDTLDYLNKNYRPQLESLNNLSTFSEL 682
>sp|P53159|YGH5_YEAST Hypothetical 44.6 kDa protein in RPL7A-HSF1 intergenic region
Length = 387
Score = 32.7 bits (73), Expect = 1.2
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 629 NGSYDVDYKLSNGELDKPISSDDNM-KEAGKIIEPVASSSEAAQK 760
NG++D ++ + G++DKPIS D K+ K+IE + + + AQK
Sbjct: 3 NGAFDAIFEYAWGQIDKPISGDFIYGKDLPKLIEIIENIFQKAQK 47
>sp|Q6RET7|CCAMK_MEDTR Calcium and calcium/calmodulin-dependent serine/threonine-protein
kinase DMI-3 (Does not make infections protein 3) (CCaMK
DMI3) (MtCCaMK)
Length = 523
Score = 31.2 bits (69), Expect = 3.4
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 611 DVHQDLNGSYDVDYKLSNGELDKPISSDDNMK--EAGKIIEPVASSSEAAQKVN 766
DV++D NG + V S GEL I + D EA ++ +AS EA + N
Sbjct: 113 DVYEDTNGVHLVLELCSGGELFDRIVAQDKYSETEAATVVHQIASGLEAVHRAN 166
>sp|P51022|PNT1_DROME ETS-like protein pointed, isoform P1 (D-ETS-2)
Length = 623
Score = 30.4 bits (67), Expect = 5.7
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -3
Query: 380 DNY*EYHLPLHHLDHTIAPHPHQENEHLCANE*MLHSLKTTYSQ 249
+NY YHL HH H H H H A + LHS T Q
Sbjct: 65 ENYPSYHLAQHHHHH---HHHHSHPHHQLAQQTGLHSHHTMQQQ 105
>sp|O88746|TOM1_MOUSE Target of Myb protein 1
Length = 492
Score = 29.6 bits (65), Expect = 9.8
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Frame = +2
Query: 8 VNLLNE-NRQYNMLNSAILELFEFIRTENIT---CLINNVIENHWDILQHHKY--VNTFQ 169
+ LL E NR + ILEL I E +T +IN+ + N + L+H ++ T Q
Sbjct: 251 LELLQELNRTCRAMQQRILELIPRISNEQLTEELLMINDNLNNVF--LRHERFERFRTGQ 308
Query: 170 TLKARYEQSIERSLKXXXXXXXXXXXXXXMLSLMNVASTRLRKDARSL 313
T KA E + L L+ MN+ S +R +SL
Sbjct: 309 TAKASSEAELATDLIDMGPDPAATNNLSSQLAGMNLGSRSVRAGLQSL 356
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 29.6 bits (65), Expect = 9.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 374 Y*EYHLPLHHLDHTIAPHPHQENEH 300
Y +H P HH H APH H + H
Sbjct: 168 YHHHHAPHHHHHHHHAPHHHHHHHH 192
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,497,905
Number of Sequences: 369166
Number of extensions: 1347327
Number of successful extensions: 3364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3357
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)