Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_L15
(398 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q29466|VPP1_BOVIN Vacuolar proton translocating ATPase 1... 89 3e-18
sp|Q920R6|VPP4_MOUSE Vacuolar proton translocating ATPase 1... 87 1e-17
sp|Q5R422|VPP1_PONPY Vacuolar proton translocating ATPase 1... 86 2e-17
sp|Q93050|VPP1_HUMAN Vacuolar proton translocating ATPase 1... 86 2e-17
sp|Q9Z1G4|VPP1_MOUSE Vacuolar proton translocating ATPase 1... 86 3e-17
sp|P25286|VPP1_RAT Vacuolar proton translocating ATPase 116... 86 3e-17
sp|Q9HBG4|VPP4_HUMAN Vacuolar proton translocating ATPase 1... 86 3e-17
sp|Q13488|VPP3_HUMAN Vacuolar proton translocating ATPase 1... 84 8e-17
sp|O97681|VPP2_BOVIN Vacuolar proton translocating ATPase 1... 80 1e-15
sp|Q9Y487|VPP2_HUMAN Vacuolar proton translocating ATPase 1... 80 2e-15
>sp|Q29466|VPP1_BOVIN Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1
(V-ATPase 116-kDa isoform a1) (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit)
(Vacuolar proton pump subunit 1) (Vacuolar adenosine
triphosphatase subunit Ac116)
Length = 838
Score = 89.0 bits (219), Expect = 3e-18
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +3
Query: 3 LSIGLKQDTLAGSIXXXXXXXXXXXXTIAVLLLMEGLSAFLHALRLHWVEFQNKFYKGEG 182
+ IGLK +LAG + T+A+LL+MEGLSAFLHALRLHWVEFQNKFY G G
Sbjct: 761 IHIGLKVKSLAGGLALFFIFAAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTG 820
Query: 183 YKFNPFNFKGVDDLSLD 233
+KF PF+F+ + + D
Sbjct: 821 FKFLPFSFEHIREGKFD 837
>sp|Q920R6|VPP4_MOUSE Vacuolar proton translocating ATPase 116 kDa subunit a isoform 4
(V-ATPase 116-kDa isoform a4) (Vacuolar proton
translocating ATPase 116 kDa subunit a kidney isoform)
Length = 833
Score = 87.0 bits (214), Expect = 1e-17
Identities = 42/71 (59%), Positives = 51/71 (71%)
Frame = +3
Query: 3 LSIGLKQDTLAGSIXXXXXXXXXXXXTIAVLLLMEGLSAFLHALRLHWVEFQNKFYKGEG 182
+SIGL+ AG + T+A+LL+MEGLSAFLHALRLHWVEFQNKFY+G G
Sbjct: 756 MSIGLRLQGWAGLVGVFIIFAVFAVLTVAILLVMEGLSAFLHALRLHWVEFQNKFYEGAG 815
Query: 183 YKFNPFNFKGV 215
KF+PF+FK V
Sbjct: 816 SKFSPFSFKHV 826
>sp|Q5R422|VPP1_PONPY Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1
(V-ATPase 116-kDa isoform a1)
Length = 837
Score = 86.3 bits (212), Expect = 2e-17
Identities = 40/71 (56%), Positives = 50/71 (70%)
Frame = +3
Query: 3 LSIGLKQDTLAGSIXXXXXXXXXXXXTIAVLLLMEGLSAFLHALRLHWVEFQNKFYKGEG 182
+ IGL +LAG + T+A+LL+MEGLSAFLHALRLHWVEFQNKFY G G
Sbjct: 760 IHIGLSVKSLAGGLVLFFFFTAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTG 819
Query: 183 YKFNPFNFKGV 215
+KF PF+F+ +
Sbjct: 820 FKFLPFSFEHI 830
>sp|Q93050|VPP1_HUMAN Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1
(V-ATPase 116-kDa isoform a1) (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit)
(Vacuolar proton pump subunit 1) (Vacuolar adenosine
triphosphatase subunit Ac116)
Length = 837
Score = 86.3 bits (212), Expect = 2e-17
Identities = 40/71 (56%), Positives = 50/71 (70%)
Frame = +3
Query: 3 LSIGLKQDTLAGSIXXXXXXXXXXXXTIAVLLLMEGLSAFLHALRLHWVEFQNKFYKGEG 182
+ IGL +LAG + T+A+LL+MEGLSAFLHALRLHWVEFQNKFY G G
Sbjct: 760 IHIGLSVKSLAGGLVLFFFFTAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTG 819
Query: 183 YKFNPFNFKGV 215
+KF PF+F+ +
Sbjct: 820 FKFLPFSFEHI 830
>sp|Q9Z1G4|VPP1_MOUSE Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1
(V-ATPase 116-kDa isoform a1) (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit)
(Vacuolar proton pump subunit 1) (Vacuolar adenosine
triphosphatase subunit Ac116)
Length = 839
Score = 85.9 bits (211), Expect = 3e-17
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +3
Query: 3 LSIGLKQDTLAGSIXXXXXXXXXXXXTIAVLLLMEGLSAFLHALRLHWVEFQNKFYKGEG 182
+ IGL +LAG + T+A+LL+MEGLSAFLHALRLHWVEFQNKFY G G
Sbjct: 762 IHIGLHVRSLAGGLGLFFIFAAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYTGTG 821
Query: 183 YKFNPFNFKGVDDLSLD 233
+KF PF+F+ + + D
Sbjct: 822 FKFLPFSFEHIREGKFD 838
>sp|P25286|VPP1_RAT Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1
(V-ATPase 116-kDa isoform a1) (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit)
(Vacuolar proton pump subunit 1) (Vacuolar adenosine
triphosphatase subunit Ac116)
Length = 838
Score = 85.9 bits (211), Expect = 3e-17
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +3
Query: 3 LSIGLKQDTLAGSIXXXXXXXXXXXXTIAVLLLMEGLSAFLHALRLHWVEFQNKFYKGEG 182
+ IGL +LAG + T+A+LL+MEGLSAFLHALRLHWVEFQNKFY G G
Sbjct: 761 IHIGLHVRSLAGGLGLFFIFAAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYTGTG 820
Query: 183 YKFNPFNFKGVDDLSLD 233
+KF PF+F+ + + D
Sbjct: 821 FKFLPFSFEHIREGKFD 837
>sp|Q9HBG4|VPP4_HUMAN Vacuolar proton translocating ATPase 116 kDa subunit a isoform 4
(V-ATPase 116-kDa isoform a4) (Vacuolar proton
translocating ATPase 116 kDa subunit a kidney isoform)
Length = 840
Score = 85.5 bits (210), Expect = 3e-17
Identities = 37/47 (78%), Positives = 44/47 (93%)
Frame = +3
Query: 81 TIAVLLLMEGLSAFLHALRLHWVEFQNKFYKGEGYKFNPFNFKGVDD 221
T+A+LL+MEGLSAFLHALRLHWVEFQNKFY G+GYKF+PF+FK + D
Sbjct: 789 TVAILLIMEGLSAFLHALRLHWVEFQNKFYVGDGYKFSPFSFKHILD 835
>sp|Q13488|VPP3_HUMAN Vacuolar proton translocating ATPase 116 kDa subunit a isoform 3
(V-ATPase 116-kDa isoform a3) (Osteoclastic proton pump
116 kDa subunit) (OC-116 kDa) (OC116) (T-cell immune
regulator 1) (T cell immune response cDNA7 protein)
(TIRC7)
Length = 830
Score = 84.3 bits (207), Expect = 8e-17
Identities = 38/73 (52%), Positives = 48/73 (65%)
Frame = +3
Query: 3 LSIGLKQDTLAGSIXXXXXXXXXXXXTIAVLLLMEGLSAFLHALRLHWVEFQNKFYKGEG 182
+ +GL ++ ++ T+A+LL+MEGLSAFLHALRLHWVEFQNKFY G G
Sbjct: 758 IGLGLGREVGVAAVVLVPIFAAFAVMTVAILLVMEGLSAFLHALRLHWVEFQNKFYSGTG 817
Query: 183 YKFNPFNFKGVDD 221
YK +PF F DD
Sbjct: 818 YKLSPFTFAATDD 830
>sp|O97681|VPP2_BOVIN Vacuolar proton translocating ATPase 116 kDa subunit A isoform 2
(V-ATPase 116-kDa isoform a2)
Length = 854
Score = 80.5 bits (197), Expect = 1e-15
Identities = 38/69 (55%), Positives = 47/69 (68%)
Frame = +3
Query: 3 LSIGLKQDTLAGSIXXXXXXXXXXXXTIAVLLLMEGLSAFLHALRLHWVEFQNKFYKGEG 182
+ +GL+ DT G + TI +LL+MEGLSAFLHA+RLHWVEFQNKFY G G
Sbjct: 775 MHVGLRVDTAYGVLVLLPVIAFFAVLTIFILLIMEGLSAFLHAIRLHWVEFQNKFYVGAG 834
Query: 183 YKFNPFNFK 209
KF PF+F+
Sbjct: 835 TKFVPFSFR 843
>sp|Q9Y487|VPP2_HUMAN Vacuolar proton translocating ATPase 116 kDa subunit a isoform 2
(V-ATPase 116-kDa isoform a2) (TJ6)
Length = 856
Score = 79.7 bits (195), Expect = 2e-15
Identities = 38/68 (55%), Positives = 46/68 (67%)
Frame = +3
Query: 3 LSIGLKQDTLAGSIXXXXXXXXXXXXTIAVLLLMEGLSAFLHALRLHWVEFQNKFYKGEG 182
+ +GL+ DT G + TI +LL+MEGLSAFLHA+RLHWVEFQNKFY G G
Sbjct: 775 MRVGLRVDTTYGVLLLLPVIALFAVLTIFILLIMEGLSAFLHAIRLHWVEFQNKFYVGAG 834
Query: 183 YKFNPFNF 206
KF PF+F
Sbjct: 835 TKFVPFSF 842
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,487,501
Number of Sequences: 369166
Number of extensions: 650625
Number of successful extensions: 1606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)