Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_L10
(430 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 183 1e-46
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 183 1e-46
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 183 1e-46
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 183 1e-46
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 183 1e-46
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 183 1e-46
sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain (Beta-1 tubulin) 183 1e-46
sp|P41386|TBB_HALDI Tubulin beta chain (Beta tubulin) 183 1e-46
sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin) 182 3e-46
sp|P02554|TBB_PIG Tubulin beta chain 182 3e-46
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 183 bits (465), Expect = 1e-46
Identities = 90/111 (81%), Positives = 92/111 (82%)
Frame = +1
Query: 1 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXXXX 180
DNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGM 147
Query: 181 XXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLIENTDE 333
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQL+ENTDE
Sbjct: 148 GTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 350 EALYDICFKH*NLTTPTYGDLNHLVS 427
EALYDICF+ LTTPTYGDLNHLVS
Sbjct: 205 EALYDICFRTLKLTTPTYGDLNHLVS 230
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 183 bits (465), Expect = 1e-46
Identities = 90/111 (81%), Positives = 92/111 (82%)
Frame = +1
Query: 1 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXXXX 180
DNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGM 147
Query: 181 XXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLIENTDE 333
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQL+ENTDE
Sbjct: 148 GTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 350 EALYDICFKH*NLTTPTYGDLNHLVS 427
EALYDICF+ LTTPTYGDLNHLVS
Sbjct: 205 EALYDICFRTLKLTTPTYGDLNHLVS 230
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 183 bits (465), Expect = 1e-46
Identities = 90/111 (81%), Positives = 92/111 (82%)
Frame = +1
Query: 1 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXXXX 180
DNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGM 147
Query: 181 XXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLIENTDE 333
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQL+ENTDE
Sbjct: 148 GTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 350 EALYDICFKH*NLTTPTYGDLNHLVS 427
EALYDICF+ LTTPTYGDLNHLVS
Sbjct: 205 EALYDICFRTLKLTTPTYGDLNHLVS 230
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 183 bits (465), Expect = 1e-46
Identities = 90/111 (81%), Positives = 92/111 (82%)
Frame = +1
Query: 1 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXXXX 180
DNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGM 147
Query: 181 XXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLIENTDE 333
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQL+ENTDE
Sbjct: 148 GTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 350 EALYDICFKH*NLTTPTYGDLNHLVS 427
EALYDICF+ LTTPTYGDLNHLVS
Sbjct: 205 EALYDICFRTLKLTTPTYGDLNHLVS 230
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 183 bits (465), Expect = 1e-46
Identities = 90/111 (81%), Positives = 92/111 (82%)
Frame = +1
Query: 1 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXXXX 180
DNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGM 147
Query: 181 XXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLIENTDE 333
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQL+ENTDE
Sbjct: 148 GTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 350 EALYDICFKH*NLTTPTYGDLNHLVS 427
EALYDICF+ LTTPTYGDLNHLVS
Sbjct: 205 EALYDICFRTLKLTTPTYGDLNHLVS 230
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 183 bits (465), Expect = 1e-46
Identities = 90/111 (81%), Positives = 92/111 (82%)
Frame = +1
Query: 1 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXXXX 180
DNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGM 147
Query: 181 XXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLIENTDE 333
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQL+ENTDE
Sbjct: 148 GTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 350 EALYDICFKH*NLTTPTYGDLNHLVS 427
EALYDICF+ LTTPTYGDLNHLVS
Sbjct: 205 EALYDICFRTLKLTTPTYGDLNHLVS 230
>sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 445
Score = 183 bits (465), Expect = 1e-46
Identities = 90/111 (81%), Positives = 92/111 (82%)
Frame = +1
Query: 1 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXXXX 180
DNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGM 147
Query: 181 XXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLIENTDE 333
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQL+ENTDE
Sbjct: 148 GTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Score = 47.8 bits (112), Expect = 1e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +2
Query: 350 EALYDICFKH*NLTTPTYGDLNHLVS 427
EALYDICF+ LTTP+YGDLNHLVS
Sbjct: 205 EALYDICFRTLKLTTPSYGDLNHLVS 230
>sp|P41386|TBB_HALDI Tubulin beta chain (Beta tubulin)
Length = 341
Score = 183 bits (465), Expect = 1e-46
Identities = 90/111 (81%), Positives = 92/111 (82%)
Frame = +1
Query: 1 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXXXX 180
DNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 14 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGM 73
Query: 181 XXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLIENTDE 333
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQL+ENTDE
Sbjct: 74 GTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 124
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 350 EALYDICFKH*NLTTPTYGDLNHLVS 427
EALYDICF+ LTTPTYGDLNHLVS
Sbjct: 131 EALYDICFRTLKLTTPTYGDLNHLVS 156
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin)
Length = 447
Score = 182 bits (462), Expect = 3e-46
Identities = 89/111 (80%), Positives = 92/111 (82%)
Frame = +1
Query: 1 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXXXX 180
DNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGM 147
Query: 181 XXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLIENTDE 333
KIREEYPDRIMNT+SVVPSPKVSDTVVEPYNATLSVHQL+ENTDE
Sbjct: 148 GTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 350 EALYDICFKH*NLTTPTYGDLNHLVS 427
EALYDICF+ LTTPTYGDLNHLVS
Sbjct: 205 EALYDICFRTLKLTTPTYGDLNHLVS 230
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 182 bits (462), Expect = 3e-46
Identities = 89/111 (80%), Positives = 92/111 (82%)
Frame = +1
Query: 1 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXXXX 180
DNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKE+ESCDCLQGFQ
Sbjct: 88 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGM 147
Query: 181 XXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLIENTDE 333
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQL+ENTDE
Sbjct: 148 GTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 350 EALYDICFKH*NLTTPTYGDLNHLVS 427
EALYDICF+ LTTPTYGDLNHLVS
Sbjct: 205 EALYDICFRTLKLTTPTYGDLNHLVS 230
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,714,647
Number of Sequences: 369166
Number of extensions: 844706
Number of successful extensions: 3297
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2945
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)