Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_L08
(914 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 298 1e-80
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 295 9e-80
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 293 5e-79
sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathe... 289 7e-78
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 285 2e-76
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 283 5e-76
sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precu... 280 5e-75
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 279 9e-75
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 278 1e-74
sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted pr... 278 2e-74
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 298 bits (764), Expect = 1e-80
Identities = 151/274 (55%), Positives = 182/274 (66%), Gaps = 5/274 (1%)
Frame = +1
Query: 1 RLIWEQNLKYIQKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYM 180
R +WE+N+K I+ HN EY GKH++++ +N F DMT+EEF+ G KP +G +
Sbjct: 49 RAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR-KGKVFQ 107
Query: 181 APENIGVLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQL 360
P P SVDWR+KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK RLIS SEQ L
Sbjct: 108 EPLFYEA-PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNL 166
Query: 361 VDCSXXXXXXXXXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFT 537
VDCS LMD AF+Y++D G++SE YPY AT+ +CK NP V TGF
Sbjct: 167 VDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFV 226
Query: 538 DIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGT 717
DI Q E L AVATVGP+SVAIDAGH SF YK GIY E CS+ +DHGVL VGYG
Sbjct: 227 DIPKQ-EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGF 285
Query: 718 QI----GKKYWIVKNSWDVTWGESGYIKMSKDRK 807
+ KYW+VKNSW WG GY+KM+KDR+
Sbjct: 286 ESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR 319
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 295 bits (756), Expect = 9e-80
Identities = 144/273 (52%), Positives = 182/273 (66%), Gaps = 5/273 (1%)
Frame = +1
Query: 1 RLIWEQNLKYIQKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYM 180
R +WE+N+K I+ HN EY GKH +++ +N F DMTNEEF+ + +G + + +G +
Sbjct: 49 RAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFR 107
Query: 181 APENIGVLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQL 360
P + LP SVDWR+KGYVTPVKNQ+QCGSCW+FSATG+LEGQ FRK +L+S SEQ L
Sbjct: 108 EPLFLD-LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNL 166
Query: 361 VDCSXXXXXXXXXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFT 537
VDCS M AF+Y+K+ G++SE YPY A D CK P V TGFT
Sbjct: 167 VDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFT 226
Query: 538 DIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYG- 714
+ E L AVATVGP+SVA+DAGH+SFQ YKSGIY E CS+ LDHGVL VGYG
Sbjct: 227 VVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGF 286
Query: 715 ---TQIGKKYWIVKNSWDVTWGESGYIKMSKDR 804
KYW+VKNSW WG +GY+K++KD+
Sbjct: 287 EGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDK 319
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 293 bits (750), Expect = 5e-79
Identities = 149/273 (54%), Positives = 179/273 (65%), Gaps = 5/273 (1%)
Frame = +1
Query: 1 RLIWEQNLKYIQKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYM 180
R +WE+N+K I+ HN EY GKH +++ +N F DMTNEEF+ G K +G +
Sbjct: 49 RAVWEKNMKMIELHNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKMFQ 107
Query: 181 APENIGVLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQL 360
P +P SVDWR+KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ L
Sbjct: 108 EPL-FAEIPKSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNL 166
Query: 361 VDCSXXXXXXXXXXXLMDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGF 534
VDCS LMDNAFRY+KD G++SE YPY D TC P TGF
Sbjct: 167 VDCSRAQGNEGCNGGLMDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECSAANDTGF 226
Query: 535 TDIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGY- 711
D+ Q E L AVAT+GP+SVAIDAGH SFQ YKSGIY + CS+ LDHGVL VGY
Sbjct: 227 VDL-PQREKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVLVVGYG 285
Query: 712 --GTQIGKKYWIVKNSWDVTWGESGYIKMSKDR 804
GT K+WIVKNSW WG +GY+KM+KD+
Sbjct: 286 FEGTDSNNKFWIVKNSWGPEWGWNGYVKMAKDQ 318
>sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 289 bits (740), Expect = 7e-78
Identities = 151/274 (55%), Positives = 177/274 (64%), Gaps = 6/274 (2%)
Frame = +1
Query: 1 RLIWEQNLKYIQKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYM 180
R +WE+N K I HN EY GKH + + +N F DMTNEEF+ G K +G +
Sbjct: 49 RAVWEKNKKIIDLHNQEYSEGKHAFRMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKLFH 107
Query: 181 APENIGVLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQL 360
P + V P SVDW +KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ L
Sbjct: 108 EPLLVDV-PKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNL 166
Query: 361 VDCSXXXXXXXXXXXLMDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGF 534
VDCS LMDNAF+YIKD G++SE YPY ATD +C P TGF
Sbjct: 167 VDCSRAQGNQGCNGGLMDNAFQYIKDNGGLDSEESYPYLATDTNSCNYKPECSAANDTGF 226
Query: 535 TDIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYG 714
DI Q E L AVATVGP+SVAIDAGH SFQ YKSGIY + CS LDHGVL VGYG
Sbjct: 227 VDI-PQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSCKDLDHGVLVVGYG 285
Query: 715 TQ----IGKKYWIVKNSWDVTWGESGYIKMSKDR 804
+ K+WIVKNSW WG +GY+KM+KD+
Sbjct: 286 FEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKDQ 319
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 285 bits (728), Expect = 2e-76
Identities = 136/268 (50%), Positives = 177/268 (66%)
Frame = +1
Query: 1 RLIWEQNLKYIQKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYM 180
R IWE+N+K+IQ+HNL +DLG TY+LGLNQF DMT EEFKAKYL M +
Sbjct: 41 RNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVP 100
Query: 181 APENIGVLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQL 360
N +P +DWR+ GYVT VK+Q CGSCW+FS TG++EGQY + ISFSEQQL
Sbjct: 101 YEANNRAVPDKIDWRESGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQL 160
Query: 361 VDCSXXXXXXXXXXXLMDNAFRYIKDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFTD 540
VDCS LM+NA++Y+K G+E+E YPYTA +G C+ N V K TG+
Sbjct: 161 VDCSGPWGNNGCSGGLMENAYQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGYYT 220
Query: 541 IQSQNETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQ 720
+ S +E +L N V P +VA+D + F +Y+SGIY ++CS +++H VLAVGYGTQ
Sbjct: 221 VHSGSEVELKNLVGARRPAAVAVDV-ESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQ 279
Query: 721 IGKKYWIVKNSWDVTWGESGYIKMSKDR 804
G YWIVKNSW WGE GYI+M+++R
Sbjct: 280 GGTDYWIVKNSWGTYWGERGYIRMARNR 307
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 283 bits (724), Expect = 5e-76
Identities = 146/274 (53%), Positives = 179/274 (65%), Gaps = 6/274 (2%)
Frame = +1
Query: 1 RLIWEQNLKYIQKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYM 180
R +WE+N+K I+ HN EY GKH +S+ +N F DMTNEEF+ G K +G +
Sbjct: 49 RAVWEKNMKMIELHNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKVFH 107
Query: 181 APENIGVLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQL 360
+ V P SVDWR+KGYVT VKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ L
Sbjct: 108 ESLVLEV-PKSVDWREKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNL 166
Query: 361 VDCSXXXXXXXXXXXLMDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGF 534
VDCS LMDNAF+Y+KD G+++E YPY + +C P TGF
Sbjct: 167 VDCSRPQGNQGCNGGLMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGF 226
Query: 535 TDIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYG 714
DI Q E L AVATVGP+SVAIDAGH+SFQ YKSGIY + CS+ LDHGVL VGYG
Sbjct: 227 VDI-PQREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYG 285
Query: 715 TQ----IGKKYWIVKNSWDVTWGESGYIKMSKDR 804
+ K+WIVKNSW WG +GY+KM+KD+
Sbjct: 286 FEGTDSNSSKFWIVKNSWGPEWGWNGYVKMAKDQ 319
>sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precursor
Length = 323
Score = 280 bits (715), Expect = 5e-75
Identities = 137/272 (50%), Positives = 185/272 (68%), Gaps = 1/272 (0%)
Frame = +1
Query: 1 RLIWEQNLKYIQKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYM 180
R+I+EQN KYI++ N +Y+ G+ T++L +N+F DMT EEF A G + + + S +
Sbjct: 41 RVIFEQNQKYIEEFNKKYENGEVTFNLAMNKFGDMTLEEFNAVMKGNIPRR-SAPVSVFY 99
Query: 181 APENIGVLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQL 360
+ G VDWR KG VTPVK+Q QCGSCW+FS TGSLEGQ+F K LIS +EQQL
Sbjct: 100 PKKETGPQATEVDWRTKGAVTPVKDQGQCGSCWAFSTTGSLEGQHFLKTGSLISLAEQQL 159
Query: 361 VDCSXXXXXXXXXXXLMDNAFRYIK-DQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFT 537
VDCS M++AF YIK + GI++E YPY A DG+C+ + + + C+G T
Sbjct: 160 VDCSRPYGPQGCNGGWMNDAFDYIKANNGIDTEAAYPYEARDGSCRFDSNSVAATCSGHT 219
Query: 538 DIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGT 717
+I S +ET L AV +GP+SV IDA H+SFQ Y SG+Y E SCS + LDH VLAVGYG+
Sbjct: 220 NIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVYYEPSCSPSYLDHAVLAVGYGS 279
Query: 718 QIGKKYWIVKNSWDVTWGESGYIKMSKDRKIN 813
+ G+ +W+VKNSW +WG++GYIKMS++R N
Sbjct: 280 EGGQDFWLVKNSWATSWGDAGYIKMSRNRNNN 311
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 279 bits (713), Expect = 9e-75
Identities = 144/275 (52%), Positives = 179/275 (65%), Gaps = 9/275 (3%)
Frame = +1
Query: 7 IWEQNLKYIQKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLG-------IMKTKPTLE 165
I+ +N I KHN + GK +Y LGLN++ADM + EFK G +M+ + L
Sbjct: 51 IFNENRHKIAKHNQLFAQGKVSYKLGLNKYADMLHHEFKETMNGYNHTLRQLMRERTGLV 110
Query: 166 GSTYMAPENIGVLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISF 345
G+TY+ P ++ V P SVDWR+ G VT VK+Q CGSCW+FS+TG+LEGQ+FRK L+S
Sbjct: 111 GATYIPPAHVTV-PKSVDWREHGAVTGVKDQGHCGSCWAFSSTGALEGQHFRKAGVLVSL 169
Query: 346 SEQQLVDCSXXXXXXXXXXXLMDNAFRYIKDQG-IESEGDYPYTATDGTCKRNPSKIVTK 522
SEQ LVDCS LMDNAFRYIKD G I++E YPY D +C N + I
Sbjct: 170 SEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEGIDDSCHFNKATIGAT 229
Query: 523 CTGFTDIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLA 702
TGF DI +E + AVAT+GPVSVAIDA H SFQLY G+YNE C LDHGVL
Sbjct: 230 DTGFVDIPEGDEEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHGVLV 289
Query: 703 VGYGT-QIGKKYWIVKNSWDVTWGESGYIKMSKDR 804
VGYGT + G YW+VKNSW TWGE GYIKM++++
Sbjct: 290 VGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARNQ 324
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 278 bits (712), Expect = 1e-74
Identities = 149/273 (54%), Positives = 177/273 (64%), Gaps = 5/273 (1%)
Frame = +1
Query: 1 RLIWEQNLKYIQKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYM 180
R IWE+N++ IQ HN EY G+H +S+ +N F DMTNEEF+ G K +G +
Sbjct: 49 RAIWEKNMRMIQLHNGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHK-KGRLFQ 107
Query: 181 APENIGVLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQL 360
P + + P SVDWR+KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ L
Sbjct: 108 EPLMLKI-PKSVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNL 166
Query: 361 VDCSXXXXXXXXXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFT 537
VDCS LMD AF+YIK+ G++SE YPY A DG+CK V TGF
Sbjct: 167 VDCSHAQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFV 226
Query: 538 DIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGY-- 711
DI Q E L AVATVGP+SVA+DA H S Q Y SGIY E +CS+ LDHGVL VGY
Sbjct: 227 DI-PQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGY 285
Query: 712 -GTQIGK-KYWIVKNSWDVTWGESGYIKMSKDR 804
GT K KYW+VKNSW WG GYIK++KDR
Sbjct: 286 EGTDSNKNKYWLVKNSWGSEWGMEGYIKIAKDR 318
>sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted protein) (MEP) (Cyclic
protein 2) (CP-2) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 278 bits (710), Expect = 2e-74
Identities = 147/273 (53%), Positives = 177/273 (64%), Gaps = 5/273 (1%)
Frame = +1
Query: 1 RLIWEQNLKYIQKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYM 180
R +WE+N++ IQ HN EY GKH +++ +N F DMTNEEF+ G K +G +
Sbjct: 49 RAVWEKNMRMIQLHNGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHK-KGRLFQ 107
Query: 181 APENIGVLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQL 360
P + + P +VDWR+KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ L
Sbjct: 108 EPLMLQI-PKTVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNL 166
Query: 361 VDCSXXXXXXXXXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFT 537
VDCS LMD AF+YIK+ G++SE YPY A DG+CK V TGF
Sbjct: 167 VDCSHDQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVANDTGFV 226
Query: 538 DIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGY-- 711
DI Q E L AVATVGP+SVA+DA H S Q Y SGIY E +CS+ LDHGVL VGY
Sbjct: 227 DI-PQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYGY 285
Query: 712 -GTQIGK-KYWIVKNSWDVTWGESGYIKMSKDR 804
GT K KYW+VKNSW WG GYIK++KDR
Sbjct: 286 EGTDSNKDKYWLVKNSWGKEWGMDGYIKIAKDR 318
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,280,427
Number of Sequences: 369166
Number of extensions: 2170468
Number of successful extensions: 6476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5933
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9318621220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)