Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_L04
(932 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum AT... 107 6e-23
sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATP... 100 4e-21
sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATP... 100 4e-21
sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPas... 100 4e-21
sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPas... 100 4e-21
sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATP... 98 3e-20
sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum AT... 97 8e-20
sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolo... 86 1e-16
sp|Q9SCN8|CD48D_ARATH Putative cell division control protei... 84 7e-16
sp|P54609|CD48A_ARATH Cell division control protein 48 homo... 82 2e-15
>sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum ATPase homolog 2 (p97/CDC48
homolog 2)
Length = 810
Score = 107 bits (266), Expect = 6e-23
Identities = 58/92 (63%), Positives = 64/92 (69%)
Frame = +3
Query: 3 DPVPEITRKHFEEAMKFARRSVTDDDVRKYEMFAQTLQQSRGFGGSFRFPSANNEASNDF 182
DPVPEITR HFEEAMKFARRSVTD+D+RKYEMFAQTLQQSRGFG +F+FP
Sbjct: 735 DPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPG--------- 785
Query: 183 SRPSAGNQQSNISVSAGGAGAGFNDGEDDLYN 278
PSAG G G+G ND +DDLYN
Sbjct: 786 EAPSAGQP------VGGNGGSGGND-DDDLYN 810
>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 100 bits (250), Expect = 4e-21
Identities = 57/93 (61%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Frame = +3
Query: 3 DPVPEITRKHFEEAMKFARRSVTDDDVRKYEMFAQTLQQSRGFGGSFRFPSANNEASNDF 182
DPVPEI R HFEEAM+FARRSV+D+D+RKYEMFAQTLQQSRGF GSFRFPS N +
Sbjct: 726 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF-GSFRFPSGNQGGAG-- 782
Query: 183 SRPSAGNQQSNISVSAGGAGAGF--NDGEDDLY 275
PS G S GG G D +DDLY
Sbjct: 783 --PSQG--------SGGGTGGSVYTEDNDDDLY 805
>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 100 bits (250), Expect = 4e-21
Identities = 57/93 (61%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Frame = +3
Query: 3 DPVPEITRKHFEEAMKFARRSVTDDDVRKYEMFAQTLQQSRGFGGSFRFPSANNEASNDF 182
DPVPEI R HFEEAM+FARRSV+D+D+RKYEMFAQTLQQSRGF GSFRFPS N +
Sbjct: 726 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF-GSFRFPSGNQGGAG-- 782
Query: 183 SRPSAGNQQSNISVSAGGAGAGF--NDGEDDLY 275
PS G S GG G D +DDLY
Sbjct: 783 --PSQG--------SGGGTGGSVYTEDNDDDLY 805
>sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 100 bits (250), Expect = 4e-21
Identities = 57/93 (61%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Frame = +3
Query: 3 DPVPEITRKHFEEAMKFARRSVTDDDVRKYEMFAQTLQQSRGFGGSFRFPSANNEASNDF 182
DPVPEI R HFEEAM+FARRSV+D+D+RKYEMFAQTLQQSRGF GSFRFPS N +
Sbjct: 726 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF-GSFRFPSGNQGGAG-- 782
Query: 183 SRPSAGNQQSNISVSAGGAGAGF--NDGEDDLY 275
PS G S GG G D +DDLY
Sbjct: 783 --PSQG--------SGGGTGGNVYTEDNDDDLY 805
>sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 100 bits (250), Expect = 4e-21
Identities = 57/93 (61%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Frame = +3
Query: 3 DPVPEITRKHFEEAMKFARRSVTDDDVRKYEMFAQTLQQSRGFGGSFRFPSANNEASNDF 182
DPVPEI R HFEEAM+FARRSV+D+D+RKYEMFAQTLQQSRGF GSFRFPS N +
Sbjct: 726 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF-GSFRFPSGNQGGAG-- 782
Query: 183 SRPSAGNQQSNISVSAGGAGAGF--NDGEDDLY 275
PS G S GG G D +DDLY
Sbjct: 783 --PSQG--------SGGGTGGSVYTEDNDDDLY 805
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit)
Length = 805
Score = 98.2 bits (243), Expect = 3e-20
Identities = 54/92 (58%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Frame = +3
Query: 3 DPVPEITRKHFEEAMKFARRSVTDDDVRKYEMFAQTLQQSRGFGGSFRFPSANNEASNDF 182
DPVPEI R HFEEAM+ ARRSV+D+D+RKYEMFAQTLQQSRGF GSFRFP+ +
Sbjct: 726 DPVPEIRRDHFEEAMRLARRSVSDNDIRKYEMFAQTLQQSRGF-GSFRFPAGGQSGAG-- 782
Query: 183 SRPSAGNQQSNISVSAGGAGAG-FNDGEDDLY 275
PS G + GG+G G F + +DDLY
Sbjct: 783 --PSPG--------AGGGSGGGHFTEEDDDLY 804
>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1 (p97/CDC48
homolog 1)
Length = 809
Score = 96.7 bits (239), Expect = 8e-20
Identities = 44/50 (88%), Positives = 48/50 (96%)
Frame = +3
Query: 3 DPVPEITRKHFEEAMKFARRSVTDDDVRKYEMFAQTLQQSRGFGGSFRFP 152
DPVPEITR HFEEAMKFARRSVTD+D+RKYEMFAQTLQQSRGFG +F+FP
Sbjct: 737 DPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 786
>sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog (Valosin containing protein
homolog) (VCP)
Length = 807
Score = 86.3 bits (212), Expect = 1e-16
Identities = 49/92 (53%), Positives = 59/92 (64%)
Frame = +3
Query: 3 DPVPEITRKHFEEAMKFARRSVTDDDVRKYEMFAQTLQQSRGFGGSFRFPSANNEASNDF 182
D V EI HFEE+MKFARRSV+D D+RKY+ FAQTLQQSRGFG FRFP + +
Sbjct: 731 DEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPESGD------ 784
Query: 183 SRPSAGNQQSNISVSAGGAGAGFNDGEDDLYN 278
R + G+ + SAGGA EDDLY+
Sbjct: 785 -RTTTGSDP--FAASAGGA------DEDDLYS 807
>sp|Q9SCN8|CD48D_ARATH Putative cell division control protein 48 homolog D (AtCDC48d)
(Transitional endoplasmic reticulum ATPase D)
Length = 815
Score = 83.6 bits (205), Expect = 7e-16
Identities = 45/92 (48%), Positives = 56/92 (60%)
Frame = +3
Query: 3 DPVPEITRKHFEEAMKFARRSVTDDDVRKYEMFAQTLQQSRGFGGSFRFPSANNEASNDF 182
+ + EI HFEE+MK+ARRSV+D D+RKY+ FAQTLQQSRGFG FRFP A + F
Sbjct: 729 EEIAEIKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAPTGTTGAF 788
Query: 183 SRPSAGNQQSNISVSAGGAGAGFNDGEDDLYN 278
P A + A GA +DDLY+
Sbjct: 789 --PGAAATVGGVDPFATSGGAA---DDDDLYS 815
>sp|P54609|CD48A_ARATH Cell division control protein 48 homolog A (AtCDC48a)
Length = 809
Score = 82.4 bits (202), Expect = 2e-15
Identities = 49/93 (52%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = +3
Query: 3 DPVPEITRKHFEEAMKFARRSVTDDDVRKYEMFAQTLQQSRGFGGSFRFP-SANNEASND 179
D V EI HFEE+MK+ARRSV+D D+RKY+ FAQTLQQSRGFG FRF SA + A+
Sbjct: 730 DEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFENSAGSGATTG 789
Query: 180 FSRPSAGNQQSNISVSAGGAGAGFNDGEDDLYN 278
+ P A SA AG +DDLYN
Sbjct: 790 VADPFA--------TSAAAAG-----DDDDLYN 809
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,525,042
Number of Sequences: 369166
Number of extensions: 1792526
Number of successful extensions: 4001
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3985
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9606826000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)