Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_L01
(458 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E) 113 2e-25
sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 112 3e-25
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 111 7e-25
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 110 1e-24
sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 110 1e-24
sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0 110 2e-24
sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A 109 3e-24
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 109 3e-24
sp|P57691|RLA0C_ARATH 60S acidic ribosomal protein P0-C 109 3e-24
sp|Q42112|RLA0B_ARATH 60S acidic ribosomal protein P0-B 109 3e-24
>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 113 bits (283), Expect = 2e-25
Identities = 54/105 (51%), Positives = 74/105 (70%)
Frame = +3
Query: 3 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 182
EA LL ML I PF YGL IQQ+Y+NGS YSP+ LDITED + + F+E + +A+V L +
Sbjct: 171 EATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIG 230
Query: 183 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 317
PTLAS+PH I N K V+ ++V TDY+ A+ +K +L DP++F
Sbjct: 231 YPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275
>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0
Length = 320
Score = 112 bits (281), Expect = 3e-25
Identities = 52/105 (49%), Positives = 73/105 (69%)
Frame = +3
Query: 3 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 182
EA LL L I PF YGL + +Y+NGS +SP+ LD+TEDD++ F V ++SLA++
Sbjct: 174 EAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAIS 233
Query: 183 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 317
PTLA+ PH+ N K V+ ++V TDY+ EA+ +KEYLKDP+KF
Sbjct: 234 YPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKF 278
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 111 bits (278), Expect = 7e-25
Identities = 53/102 (51%), Positives = 70/102 (68%)
Frame = +3
Query: 12 LLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPT 191
+L ML I PF YGL IQQ+Y+NGS YSP+ LDITED + + F++ + +A+V L + PT
Sbjct: 177 MLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPT 236
Query: 192 LASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 317
LAS+PH I N K V+ ++V TDY AE +K YL DPT F
Sbjct: 237 LASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAF 278
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 110 bits (276), Expect = 1e-24
Identities = 49/105 (46%), Positives = 79/105 (75%)
Frame = +3
Query: 3 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 182
E+ LL ML + PF YGL ++Q+Y++G+ Y+P+ LD+T +++ + F+ + VA+VSLA+N
Sbjct: 171 ESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVN 230
Query: 183 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 317
PTLASV H +AN ++ ++G++ VTD + KEAE IK ++ DP+KF
Sbjct: 231 YPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF 275
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
Length = 315
Score = 110 bits (276), Expect = 1e-24
Identities = 53/105 (50%), Positives = 72/105 (68%)
Frame = +3
Query: 3 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 182
EA LL ML I PF +GL IQQ+Y+NGS YSP+ LDITED + F+E + +A+V L +
Sbjct: 171 EATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIG 230
Query: 183 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 317
PT+ASVPH + N K V+ L+V TDY+ A+ +K +L DP+ F
Sbjct: 231 YPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF 275
>sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0
Length = 319
Score = 110 bits (274), Expect = 2e-24
Identities = 51/105 (48%), Positives = 75/105 (71%)
Frame = +3
Query: 3 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 182
E+ LL L I PF YGL++ +YE+GS +SP+ LD++E+D++ F VA++SLA++
Sbjct: 174 ESALLAKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAIS 233
Query: 183 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 317
PTLA+VPH+ N K V+ ++V TDY+ A+ IKEYLKDP+KF
Sbjct: 234 YPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF 278
>sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A
Length = 317
Score = 109 bits (273), Expect = 3e-24
Identities = 47/105 (44%), Positives = 74/105 (70%)
Frame = +3
Query: 3 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 182
EA LL L I PF YGL ++ +Y+NGS ++P+ L++TEDD++ F + A+SLA++
Sbjct: 174 EAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAIS 233
Query: 183 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 317
PT+A+ PH+ N K V+ +++ T+Y+ +AE +KE+LKDPTKF
Sbjct: 234 YPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 109 bits (272), Expect = 3e-24
Identities = 54/105 (51%), Positives = 71/105 (67%)
Frame = +3
Query: 3 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 182
EA LL ML I PF +GL IQQ+++NGS Y+P+ LDITE+ + F+E + VA+V L +
Sbjct: 171 EATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIG 230
Query: 183 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 317
PT+ASVPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 231 YPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>sp|P57691|RLA0C_ARATH 60S acidic ribosomal protein P0-C
Length = 323
Score = 109 bits (272), Expect = 3e-24
Identities = 49/105 (46%), Positives = 71/105 (67%)
Frame = +3
Query: 3 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 182
EA LL L I PF YGL +Q +Y+NGS +SP+ LD+TED ++ F V +++LA++
Sbjct: 173 EAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVS 232
Query: 183 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 317
PTLA+ PH+ N K + ++V TDY +AE +KE+LKDP+KF
Sbjct: 233 YPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277
>sp|Q42112|RLA0B_ARATH 60S acidic ribosomal protein P0-B
Length = 320
Score = 109 bits (272), Expect = 3e-24
Identities = 49/105 (46%), Positives = 71/105 (67%)
Frame = +3
Query: 3 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 182
EA LL L I PF YGL +Q +Y+NGS +SP+ LD+TED ++ F V +++LA++
Sbjct: 173 EAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVS 232
Query: 183 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 317
PTLA+ PH+ N K + ++V T+Y +AE +KEYLKDP+KF
Sbjct: 233 YPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,808,266
Number of Sequences: 369166
Number of extensions: 672332
Number of successful extensions: 1898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1896
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)