Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_K04
(441 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q63627|SFR15_RAT Splicing factor, arginine/serine-rich 1... 66 3e-11
sp|Q25434|FP1_MYTCO Adhesive plaque matrix protein precurso... 60 2e-09
sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF 58 8e-09
sp|P35085|CBPA_DICDI Calcium-binding protein 58 1e-08
sp|Q9Y6V0|PCLO_HUMAN Piccolo protein (Aczonin) 58 1e-08
sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 (Spliceo... 57 1e-08
sp|P50995|ANX11_HUMAN Annexin A11 (Annexin XI) (Calcyclin-a... 57 2e-08
sp|P38486|LEG3_CANFA Galectin-3 (Galactose-specific lectin ... 56 3e-08
sp|P97384|ANX11_MOUSE Annexin A11 (Annexin XI) (Calcyclin-a... 55 7e-08
sp|Q8R4X3|RBM12_MOUSE RNA-binding protein 12 (RNA-binding m... 54 2e-07
>sp|Q63627|SFR15_RAT Splicing factor, arginine/serine-rich 15 (CTD-binding SR-like
protein RA4)
Length = 1048
Score = 66.2 bits (160), Expect = 3e-11
Identities = 43/111 (38%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNY 181
+PP QPGM P QPGM P PG+ P QPGM P G QPG+
Sbjct: 219 FPPMPQPGMPQPGMPQPGMPQPGLSQPGLPQPGMPQPGMPQPGMPQPG----MPQPGLAQ 274
Query: 182 SNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPST-----GYNPGVPPGSYPH 319
+QPGM P P GM PQ GM P P T + P P + PH
Sbjct: 275 PGLAQPGMPQPGMPQPGM--PQPGMPQPGMPPTPPVQPTFQPTFQPQNEPH 323
Score = 52.8 bits (125), Expect = 3e-07
Identities = 44/114 (38%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Frame = +2
Query: 5 PPAGQ-PGM-------VYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHG----G 148
PP GQ PG +PP QPGM P GM P QPG+ P G G
Sbjct: 202 PPNGQMPGFGLLSAPPPFPPMPQPGMPQP-----GMPQPGMPQPGLSQPGLPQPGMPQPG 256
Query: 149 AYSAG--QPGMNYSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGYNPGVPP 304
G QPGM +QPG+ P P GM PQ GM P P PG+PP
Sbjct: 257 MPQPGMPQPGMPQPGLAQPGLAQPGMPQPGM--PQPGMPQPGMP----QPGMPP 304
Score = 33.1 bits (74), Expect = 0.27
Identities = 32/120 (26%), Positives = 38/120 (31%), Gaps = 26/120 (21%)
Frame = +2
Query: 35 PPAGQPGMIYPPAIPPGMVC-PPAGQPGMVYPSSGTHGGAYSAGQPGMNYS--------- 184
P A P + PA+P PP Q YP G AY+ Q +
Sbjct: 136 PAAATPAVA--PAVPASSATSPPPPQAPFGYPGDGMQQPAYTQHQNVDQFQPRMMALQQD 193
Query: 185 ----------NPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGY------NPGVPPGSYP 316
N PG +APP PQ GM P P G PG+P P
Sbjct: 194 SMQHQVPLPPNGQMPGFGLLSAPPPFPPMPQPGMPQPGMPQPGMPQPGLSQPGLPQPGMP 253
Score = 33.1 bits (74), Expect = 0.27
Identities = 37/116 (31%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Frame = +2
Query: 20 PGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAY---------SAGQPG 172
PG + P G P I PP P PP P +V SG G A SAG P
Sbjct: 651 PGFL--PPGPPPPITPPVSIPPPHTPPISIPNLV---SGARGNAESADSAKMYGSAGPPA 705
Query: 173 MNYSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGY---NPGV-----PPGSYP 316
S P+ P + P + G G + PSTG PG+ PPG P
Sbjct: 706 APTSLPTPP-VTQPVSLLGTQGVAPGPVIGLQAPSTGLLGGRPGLIPLQRPPGMPP 760
Score = 29.3 bits (64), Expect = 4.0
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Frame = +2
Query: 38 PAGQPGMIYPPAIPPGMVCPP---AGQPGMVYPSSGTHGGAYSAGQPGMNYSNPS--QPG 202
P P + PP +PP PP A QP P G + G P P PG
Sbjct: 584 PVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPPFWGPG 643
Query: 203 MVYPNAPPGGMTYPQGGMTYPSGPSTGYNPGVPPGSYPH 319
+ PPG + P G + P + P PP S P+
Sbjct: 644 FNPMHLPPGFL--PPGPPPPITPPVSIPPPHTPPISIPN 680
Score = 29.3 bits (64), Expect = 4.0
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +2
Query: 5 PPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHG 145
PP G G PP P + P P G P G PG+ P G G
Sbjct: 783 PPPGPGGFAMPP---PHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGG 826
>sp|Q25434|FP1_MYTCO Adhesive plaque matrix protein precursor (Foot protein 1) (MCFP1)
Length = 872
Score = 60.5 bits (145), Expect = 2e-09
Identities = 38/112 (33%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAG-QPGMN 178
YPP +P + YPP +P YPP+ P + PP +P YP + G+Y QP
Sbjct: 628 YPPTYKPKITYPPTYKPKPSYPPSYRPKITYPPTYKPKKSYPQAYKSKGSYPPSYQPKKT 687
Query: 179 YSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPS-----TGYNPGVPPG-SYP 316
Y +P YP ++YP T PS P+ T Y P P SYP
Sbjct: 688 YPPSYKPKKTYPPTYKPKISYPPTYKTKPSYPASYKRKTSYPPTYKPKISYP 739
Score = 55.1 bits (131), Expect = 7e-08
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNY 181
YPP +P + YPP + YPP+ P PP +P + YP + +Y+ +P Y
Sbjct: 140 YPPTYKPKITYPPTYKQKPSYPPSYKPKTTYPPTYKPKITYPPTYKRKPSYTPYKPKATY 199
Query: 182 SNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGYNPGVPPG-SYP 316
+P + YP TY + P P T Y P P SYP
Sbjct: 200 PPTYKPKITYP------PTYKRKPSYTPYKPKTTYPPTYKPKISYP 239
Score = 51.6 bits (122), Expect = 7e-07
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNY 181
YPP+ +P YPP +P + YPP P PP +P + YP + +Y P
Sbjct: 548 YPPSYKPKTTYPPTYKPKIRYPPTYKPKASYPPTYKPKITYPPTYKPKPSY----PTPYK 603
Query: 182 SNPSQPGMV-----YPNAPPGGMTYP---QGGMTYPSGPSTGYNPGVPPGSYP 316
PS P + YP A TYP + +TYP P+ P PP P
Sbjct: 604 QKPSYPPIYKSKSSYPTAYKSKKTYPPTYKPKITYP--PTYKPKPSYPPSYRP 654
Score = 50.1 bits (118), Expect = 2e-06
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNY 181
YPP +P YPP +P + YPP P PP +P + YP + +Y P
Sbjct: 448 YPPTYKPKPSYPPTYKPKITYPPTYKPKPSYPPTYKPKITYPPTYKRKPSY----PTPYK 503
Query: 182 SNPSQPGMV-----YPNAPPGGMTYP---QGGMTYPSGPSTGYNPGVPPGSYP 316
PS P + YP + TYP + +TYP P+ P PP P
Sbjct: 504 QKPSYPPIYKSKSSYPTSYKSKKTYPPTYKPKITYP--PTYKPKPSYPPSYKP 554
Score = 49.3 bits (116), Expect = 4e-06
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNY 181
YPP +P YPP +P + YPP P PP +P + YP + +Y P
Sbjct: 268 YPPTYKPKPSYPPTYKPKVTYPPTYKPKPSYPPTYKPKITYPPTYKPKPSY----PTPYK 323
Query: 182 SNPSQPGMV-----YPNAPPGGMTYP---QGGMTYPSGPSTGYNPGVPPGSYP 316
PS P + YP + TYP + +TYP P+ P PP P
Sbjct: 324 QKPSYPPIYKSKSSYPTSYKSKKTYPPTYKPKITYP--PTYKPKPSYPPSYKP 374
Score = 48.9 bits (115), Expect = 5e-06
Identities = 32/105 (30%), Positives = 43/105 (40%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNY 181
YPP+ + + YPP +P + YPP PP+ +P YP + Y
Sbjct: 130 YPPSYKHKITYPPTYKPKITYPPTYKQKPSYPPSYKPKTTYPPTYKPKITYPPTYKRKPS 189
Query: 182 SNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGYNPGVPPGSYP 316
P +P YP +TYP TY PS Y P P +YP
Sbjct: 190 YTPYKPKATYPPTYKPKITYPP---TYKRKPS--YTPYKPKTTYP 229
Score = 47.8 bits (112), Expect = 1e-05
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIP---------PGMVCPPAGQPGMVYPSSGTHGGAY 154
YPP+ +P YPP +P + YPP P PP +P + YP + +Y
Sbjct: 160 YPPSYKPKTTYPPTYKPKITYPPTYKRKPSYTPYKPKATYPPTYKPKITYPPTYKRKPSY 219
Query: 155 SAGQPGMNYSNPSQPGMVYPNAPPGGMTYP---QGGMTYPS--GPSTGYNPGV-PPGSYP 316
+ +P Y +P + YP+ +Y + TYP P Y P P SYP
Sbjct: 220 TPYKPKTTYPPTYKPKISYPSIYKPKASYVSSYKSKKTYPPTYKPKISYPPTYKPKPSYP 279
Score = 47.4 bits (111), Expect = 1e-05
Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAY-SAGQPGMN 178
YPP +P + YPP +P YPP P + PP +P YP + Y +P +
Sbjct: 258 YPPTYKPKISYPPTYKPKPSYPPTYKPKVTYPPTYKPKPSYPPTYKPKITYPPTYKPKPS 317
Query: 179 YSNPSQPGMVYPNAPPGGMTYP---QGGMTYPS--GPSTGYNPGV-PPGSYP 316
Y P + YP +YP + TYP P Y P P SYP
Sbjct: 318 YPTPYKQKPSYPPIYKSKSSYPTSYKSKKTYPPTYKPKITYPPTYKPKPSYP 369
Score = 45.8 bits (107), Expect = 4e-05
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAG-QPGMN 178
YPP +P + YPP +P YPP+ P P +P + YP + +Y +P
Sbjct: 348 YPPTYKPKITYPPTYKPKPSYPPSYKPKKTYSPTYKPKITYPPTYKPKPSYPPSYKPKTT 407
Query: 179 YSNPSQPGMVYPNAPPGGMTYP---QGGMTYPS--GPSTGYNPGV-PPGSYP 316
Y +P + YP +Y + TYP P Y P P SYP
Sbjct: 408 YPPTYKPKISYPPTYKPKASYVSSYKSKKTYPPTYKPKISYPPTYKPKPSYP 459
Score = 45.4 bits (106), Expect = 5e-05
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPS 130
YPP +P + YPP +P + YPP P + PPA +P + YPS
Sbjct: 828 YPPTYKPKISYPPTYKPKITYPPTYKPKISYPPAYKPKISYPS 870
Score = 45.1 bits (105), Expect = 7e-05
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNY 181
YP + + YPP +P + YPP P PP+ +P YP + +P + Y
Sbjct: 518 YPTSYKSKKTYPPTYKPKITYPPTYKPKPSYPPSYKPKTTYPPT---------YKPKIRY 568
Query: 182 SNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPST-GYNPGVPP-----GSYP 316
+P YP +TYP PS P+ P PP SYP
Sbjct: 569 PPTYKPKASYPPTYKPKITYPPTYKPKPSYPTPYKQKPSYPPIYKSKSSYP 619
Score = 41.2 bits (95), Expect = 0.001
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYS-AGQPGMN 178
YPP + YP + + YPP P + PP +P YP S YS +P +
Sbjct: 328 YPPIYKSKSSYPTSYKSKKTYPPTYKPKITYPPTYKPKPSYPPSYKPKKTYSPTYKPKIT 387
Query: 179 YSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGYNPGVPP 304
Y +P YP + TYP TY P Y P P
Sbjct: 388 YPPTYKPKPSYPPSYKPKTTYPP---TYK--PKISYPPTYKP 424
Score = 39.3 bits (90), Expect = 0.004
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAY-SAGQPGMN 178
YPP +P + YP +P Y + PP +P + YP + +Y +P +
Sbjct: 228 YPPTYKPKISYPSIYKPKASYVSSYKSKKTYPPTYKPKISYPPTYKPKPSYPPTYKPKVT 287
Query: 179 YSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPST-GYNPGVPP-----GSYP 316
Y +P YP +TYP PS P+ P PP SYP
Sbjct: 288 YPPTYKPKPSYPPTYKPKITYPPTYKPKPSYPTPYKQKPSYPPIYKSKSSYP 339
Score = 38.9 bits (89), Expect = 0.005
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAG------ 163
YPP +P Y + +P + YPP P + +P + YP + +Y++
Sbjct: 748 YPPTYKPKPSYASSYKPKIRYPPTYKPKPSYASSYKPKIRYPPTYKPKPSYASSYKPKIR 807
Query: 164 -----QPGMNYSNPSQPGMVYPNAPPGGMTYP---QGGMTYPS--GPSTGYNPGVPPG-S 310
+P +Y++ +P + YP ++YP + +TYP P Y P P S
Sbjct: 808 YPPTYKPKPSYASSYKPKITYPPTYKPKISYPPTYKPKITYPPTYKPKISYPPAYKPKIS 867
Query: 311 YP 316
YP
Sbjct: 868 YP 869
Score = 38.5 bits (88), Expect = 0.007
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNY 181
YPP +P Y + +P + YPP P + PP +P + YP + +P ++Y
Sbjct: 808 YPPTYKPKPSYASSYKPKITYPPTYKPKISYPPTYKPKITYPPT---------YKPKISY 858
Query: 182 SNPSQPGMVYPN 217
+P + YP+
Sbjct: 859 PPAYKPKISYPS 870
Score = 37.0 bits (84), Expect = 0.019
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAY-SAGQPGMN 178
YPP +P + YPP + YP + PP +P + YPS+ +Y +P +
Sbjct: 698 YPPTYKPKISYPPTYKTKPSYPASYKRKTSYPPTYKPKISYPSTYKAKPSYPPTYKPKPS 757
Query: 179 YSNPSQPGMVYP 214
Y++ +P + YP
Sbjct: 758 YASSYKPKIRYP 769
>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF
Length = 1097
Score = 58.2 bits (139), Expect = 8e-09
Identities = 46/129 (35%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQP------GMIYPPAIPPGM-VCPPAGQPGMVY----PSSGTHGG 148
+P +G PG V P+G P G PP + PGM + PP+G PG P SG HGG
Sbjct: 148 FPASGPPGGV--PSGPPSGARPIGFGSPPPMGPGMSMPPPSGMPGGPLSNGPPPSGMHGG 205
Query: 149 AYS-----AGQPGMNYSNPSQPGMVYPNAPPGGMTYPQGGMTYP---------SGPSTGY 286
S +G PG SN P M+ P A P G + G M P +GP TG
Sbjct: 206 HLSNGPPPSGMPGGTLSNGPPPPMMGPGAFPRGSQFTSGPMMAPPPPYGQPPNAGPFTGN 265
Query: 287 NPGVPPGSY 313
+P P ++
Sbjct: 266 SPLSSPPAH 274
Score = 40.8 bits (94), Expect = 0.001
Identities = 37/113 (32%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Frame = +2
Query: 8 PAGQPGMVYP-----PAGQPGMIYPPAIPP--GMVCPPAGQPGMVYPSSGTHGGAYSAGQ 166
P +PG P P G P + P PP V PP+ QP GG S G
Sbjct: 83 PMARPGPPPPAAMARPGGPPQVSQPGGFPPVGRPVAPPSNQPPF--------GGRPSTGP 134
Query: 167 PGMNYSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGYNP---GVPPGSYP 316
S+ QPG + PPGG+ PSGP +G P G PP P
Sbjct: 135 LVGGGSSFPQPGGFPASGPPGGV---------PSGPPSGARPIGFGSPPPMGP 178
Score = 35.8 bits (81), Expect = 0.042
Identities = 37/123 (30%), Positives = 44/123 (35%), Gaps = 33/123 (26%)
Frame = +2
Query: 5 PPAGQPGMVY----PPAGQPG----------MIYPPAIPPG-------MVCPPA--GQPG 115
PP+G G PP+G PG M+ P A P G M+ PP GQP
Sbjct: 198 PPSGMHGGHLSNGPPPSGMPGGTLSNGPPPPMMGPGAFPRGSQFTSGPMMAPPPPYGQPP 257
Query: 116 MVYPSSG--------THGGAYSAGQPGMNYSNPSQPGMVYPNAPPGGMTYPQG--GMTYP 265
P +G H PG+ Y P PG APP + G G Y
Sbjct: 258 NAGPFTGNSPLSSPPAHSIPAPTNFPGVPYGRPPMPGGFPYGAPPQQLPSAPGTPGSIYG 317
Query: 266 SGP 274
GP
Sbjct: 318 MGP 320
>sp|P35085|CBPA_DICDI Calcium-binding protein
Length = 467
Score = 57.8 bits (138), Expect = 1e-08
Identities = 47/116 (40%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Frame = +2
Query: 2 YPPAGQPGMV--YPPA--GQPGMIYPPAIP--PGMVCPPAGQPGMVYPSSGTHGGAYSAG 163
YPP QPG YPP GQPG YPP P PG P GQPG P G Y
Sbjct: 105 YPPQ-QPGQSGQYPPQQPGQPG--YPPQQPGAPGQYPPQQGQPGQYPPQQPGQPGQYPPQ 161
Query: 164 QPGM-NYSNPSQPGMVYPNAP--PGGMTYPQGGMTYPSGPSTGYNPGVPP--GSYP 316
Q G P QPG P P PG QG + PGVPP G+YP
Sbjct: 162 QQGQYPPQQPGQPGAYPPQQPGQPGAYPPQQGVQNTLAKTGAPGQPGVPPPQGAYP 217
Score = 56.6 bits (135), Expect = 2e-08
Identities = 45/111 (40%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Frame = +2
Query: 2 YPPA--GQPGMVYPPAGQPGMIYPPAIP--PGMVCPPAGQPGMVYPSSGTHGGAYSAGQP 169
YPP G PG P GQPG YPP P PG P Q G P GAY QP
Sbjct: 126 YPPQQPGAPGQYPPQQGQPGQ-YPPQQPGQPGQY--PPQQQGQYPPQQPGQPGAYPPQQP 182
Query: 170 GMNYSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGYNPGVPP--GSYP 316
G + P Q G+ A G P G+ P G G PGVPP G+YP
Sbjct: 183 GQPGAYPPQQGVQNTLAKTGAPGQP--GVPPPQGAYPG-QPGVPPQQGAYP 230
Score = 48.1 bits (113), Expect = 8e-06
Identities = 46/140 (32%), Positives = 50/140 (35%), Gaps = 35/140 (25%)
Frame = +2
Query: 2 YPPA--GQPGMVYP------------PAGQPGM-----IYP--PAIPPGMVCPPAGQPGM 118
YPP GQPG P GQPG+ YP P +PP P QP M
Sbjct: 177 YPPQQPGQPGAYPPQQGVQNTLAKTGAPGQPGVPPPQGAYPGQPGVPPQQGAYPGQQPPM 236
Query: 119 -VYPSSGTHGGAYSAGQPGMNYSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPST----- 280
YP G G GQPG P Q + YP P YP YP
Sbjct: 237 GAYPPQGQPGAYPPQGQPGA--YPPQQQQVAYPGQQPPMGAYPPQQGAYPGQQGAYPGQQ 294
Query: 281 -------GYNPGVPP-GSYP 316
G PG PP G+YP
Sbjct: 295 GAYPGQQGAYPGQPPMGAYP 314
Score = 39.7 bits (91), Expect = 0.003
Identities = 41/131 (31%), Positives = 43/131 (32%), Gaps = 27/131 (20%)
Frame = +2
Query: 5 PPAGQ--------PGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSA 160
PPAG P V G PG P P P QPG + + G
Sbjct: 8 PPAGSAADFYSQMPVKVMGTPGAPGSQSTPGAPGAPGQYPPQQPGAPGSNLPPYPGTQQP 67
Query: 161 GQPGM-NYSNPSQPGMV----------YPNAPPGGMTYP-----QGGMTYPSGP-STGYN 289
G PG P QPG YP PG YP Q G P P GY
Sbjct: 68 GAPGAPGQYPPQQPGQYPPQQPGAPGQYPPQQPGQPGYPPQQPGQSGQYPPQQPGQPGYP 127
Query: 290 PGVP--PGSYP 316
P P PG YP
Sbjct: 128 PQQPGAPGQYP 138
>sp|Q9Y6V0|PCLO_HUMAN Piccolo protein (Aczonin)
Length = 5183
Score = 57.8 bits (138), Expect = 1e-08
Identities = 41/110 (37%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Frame = +2
Query: 5 PPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNYS 184
P A QPG V PP PG PPA P G PPA Q G PSS G A PG+ +
Sbjct: 341 PLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKT 400
Query: 185 NPSQPGMVYPNAPPGGMTYP---QGGMTYPS---GPSTGYNPGVPPGSYP 316
QPG P G P Q G+ P+ GP+ PP P
Sbjct: 401 PAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPAQTKPPSQQP 450
Score = 48.1 bits (113), Expect = 8e-06
Identities = 29/75 (38%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 5 PPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNYS 184
PP+ QPG PP QPG P PG PP+ QPG PS+ A + Q ++
Sbjct: 445 PPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQ---QFT 501
Query: 185 NP-SQPGMVYPNAPP 226
P SQ G P PP
Sbjct: 502 KPVSQTGFGKPLQPP 516
Score = 45.1 bits (105), Expect = 7e-05
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Frame = +2
Query: 5 PPAGQPGMVYPPAGQPGMIYPPAIP-----PGMVCPPAGQPGMVYPSSGTHGGAYSAGQP 169
PP Q G P A QPG+ P P P PP+ QPG P QP
Sbjct: 410 PPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPAQTKPPSQQPGSTKP---------PPQQP 460
Query: 170 GMNYSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPS 277
G +P QPG P + G P P+ PS
Sbjct: 461 GPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 496
Score = 43.9 bits (102), Expect = 2e-04
Identities = 38/113 (33%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Frame = +2
Query: 5 PPAGQPGMVYPPA-------GQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAG 163
PP QP PPA QPG PPA P G+ P A QPG V P
Sbjct: 304 PPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPV---------- 353
Query: 164 QPGMNYSNPSQP-GMVYPNAPPGGMTYPQGGMTYPSG----PSTGYNPGVPPG 307
QP P+QP G P A G P P P G P PG
Sbjct: 354 QPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPG 406
Score = 43.5 bits (101), Expect = 2e-04
Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Frame = +2
Query: 5 PPAGQPGMVYP-----PAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAY-SAGQ 166
P A QPG+ P P P PP+ PG PP QPG PS G + Q
Sbjct: 420 PLAQQPGLQSPAKAPGPTKTPAQTKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQ 479
Query: 167 PGMNYSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPST 280
PG + QP P+A Q G P P T
Sbjct: 480 PGSAKPSAQQPSPAKPSAQQFTKPVSQTGFGKPLQPPT 517
Score = 32.0 bits (71), Expect = 0.61
Identities = 27/92 (29%), Positives = 37/92 (40%)
Frame = +2
Query: 35 PPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNYSNPSQPGMVYP 214
P Q ++ ++ P + P +P + P+ G A QPG SQPG P
Sbjct: 281 PQTKQADIVRGESVKPSL--PSPSKPPIQQPTPGKP----PAQQPG---HEKSQPGPAKP 331
Query: 215 NAPPGGMTYPQGGMTYPSGPSTGYNPGVPPGS 310
A P G+T P P T P PPG+
Sbjct: 332 PAQPSGLTKP-----LAQQPGTVKPPVQPPGT 358
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 (Spliceosome associated protein 49)
(SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa
subunit)
Length = 424
Score = 57.4 bits (137), Expect = 1e-08
Identities = 47/123 (38%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Frame = +2
Query: 5 PPAGQP--GMVYPPAGQPGMIYPPAIPPGMVCP--PAGQPGMVYPSSGTHGGAYSAGQPG 172
PP G P G PP PG + PP IPP M P P G G PS+GT G AG PG
Sbjct: 233 PPPGMPPPGSFPPPVPPPGAL-PPGIPPAMPPPPMPPGAAGHGPPSAGTPG----AGHPG 287
Query: 173 MNYSNPSQPGMVYPNAPPGGMTYP-----------QGGMTYP-SGP--STGYNPGVPPGS 310
+S+P PPGGM +P G+ +P +GP S G P PP
Sbjct: 288 HGHSHPHP-------FPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPG 340
Query: 311 YPH 319
PH
Sbjct: 341 MPH 343
Score = 50.1 bits (118), Expect = 2e-06
Identities = 39/120 (32%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPPGMV---CPPAGQPGMVYPSSG-TH------GGA 151
+PP P PP P M PP +PPG P AG PG +P G +H GG
Sbjct: 243 FPPPVPPPGALPPGIPPAM-PPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGM 301
Query: 152 YSAGQPGMNYSNPSQPGMVYPNAPPGGM-----TYPQGGMTYPSGPSTGYNPGVPPGSYP 316
G M ++ G+ +P+A P G P GM +P P G P PP P
Sbjct: 302 PHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSP 361
Score = 39.3 bits (90), Expect = 0.004
Identities = 43/125 (34%), Positives = 47/125 (37%), Gaps = 20/125 (16%)
Frame = +2
Query: 2 YPPAGQP---------------GMVYPPAGQPGM--IYPPAIPPGMVCPPAGQPGMVYPS 130
+PP G P G+ +P AG PG PP PPGM P G P M P
Sbjct: 296 FPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGM--PHPGPPPMGMPP 353
Query: 131 SGTHGGAYSAGQPGMNYSNPSQP-GM--VYPNAPPGGMTYPQGGMTYPSGPSTGYNPGVP 301
G G+ G PG P P GM P PP G T P P P GY G
Sbjct: 354 RGPPFGS-PMGHPG-----PMPPHGMRGPPPLMPPHGYTGP------PRPPPYGYQRGPL 401
Query: 302 PGSYP 316
P P
Sbjct: 402 PPPRP 406
Score = 35.4 bits (80), Expect = 0.055
Identities = 38/106 (35%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Frame = +2
Query: 2 YPPAGQPGM--VYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGM 175
+P AG PG PP PGM +P PP M PP G P + S H G GM
Sbjct: 321 HPHAGPPGSGGQPPPRPPPGMPHPG--PPPMGMPPRGPP---FGSPMGHPGPMP--PHGM 373
Query: 176 NYSNPSQPGMVY---PNAPPGGMTYPQGGMTYPSGPSTGYNPGVPP 304
P P Y P PP G Q G P P+ P VPP
Sbjct: 374 RGPPPLMPPHGYTGPPRPPPYGY---QRGPLPPPRPTP--RPPVPP 414
>sp|P50995|ANX11_HUMAN Annexin A11 (Annexin XI) (Calcyclin-associated annexin 50) (CAP-50)
(56 kDa autoantigen)
Length = 505
Score = 56.6 bits (135), Expect = 2e-08
Identities = 43/117 (36%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Frame = +2
Query: 2 YPPAGQPGMVYPPA-----GQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQ 166
YP G PG YPP GQP P P GM PP G P PS + GA GQ
Sbjct: 74 YP--GAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGGNPPSRMPSYPPYPGAPVPGQ 131
Query: 167 ----PGMN--YSNPSQPGMVYPNAPPGGMTYPQGGM-TYPSGPSTG-YNPGVPPGSY 313
PG + P QP + YP PP + Q + +YP P +G P VPP +
Sbjct: 132 PMPPPGQQPPGAYPGQPPVTYPGQPPVPLPGQQQPVPSYPGYPGSGTVTPAVPPTQF 188
Score = 47.8 bits (112), Expect = 1e-05
Identities = 45/123 (36%), Positives = 47/123 (38%), Gaps = 18/123 (14%)
Frame = +2
Query: 2 YPPA---GQP--GMVYPPAGQPGMIYPPAIPP---GMVCPPAGQ------PGMVYPSSGT 139
YPPA G P G YPP PP++PP V AGQ GM SGT
Sbjct: 13 YPPAAPGGGPWGGAAYPP--------PPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGT 64
Query: 140 HGGAYSAGQPGMNYSNPSQPGMVYPNAPPGGMTYPQGGM----TYPSGPSTGYNPGVPPG 307
GGA M P PG YP PPGG P Y P G NP
Sbjct: 65 FGGA------NMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGGNPPSRMP 118
Query: 308 SYP 316
SYP
Sbjct: 119 SYP 121
>sp|P38486|LEG3_CANFA Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)
(IgE-binding protein) (35 kDa lectin) (Carbohydrate
binding protein 35) (CBP 35) (Laminin-binding protein)
(Lectin L-29)
Length = 296
Score = 56.2 bits (134), Expect = 3e-08
Identities = 44/116 (37%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Frame = +2
Query: 8 PAGQPGMVYPPAGQPGMIYPPAIPPGMV---CPPAGQPGMVYPSSGTHGGAYSAGQPGMN 178
PAG G YP A PG YP PPG PP G PG P G Y P
Sbjct: 30 PAGAGG--YPGASYPGA-YPGQAPPGGYPGQAPPGGYPGQAPP------GGYPGQAPPGG 80
Query: 179 YSNPSQPGMVYPNAPPGGM-------TYP-QGGMTYPSGPSTGYNPGVP--PGSYP 316
Y + PG APPGG TYP YP + G PG P PG+YP
Sbjct: 81 YPGQAPPGGYPGQAPPGGYPGQAPPGTYPGPTAPAYPGPTAPGTQPGQPSGPGAYP 136
Score = 54.3 bits (129), Expect = 1e-07
Identities = 40/109 (36%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Frame = +2
Query: 5 PPAGQPGMVYPPAGQPGMI----YPPAIPPGMV---CPPAGQPGMVYPSSGTHGGAYSAG 163
PP G PG PP G PG YP PPG PP G PG P GT+ G +
Sbjct: 59 PPGGYPGQA-PPGGYPGQAPPGGYPGQAPPGGYPGQAPPGGYPGQAPP--GTYPGPTAPA 115
Query: 164 QPGMNYSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGYNP-GVPPG 307
PG P+ PG P P G YP G G P G+P G
Sbjct: 116 YPG-----PTAPG-TQPGQPSGPGAYPPPGQPSAPGAYPAAGPFGIPAG 158
Score = 44.3 bits (103), Expect = 1e-04
Identities = 39/104 (37%), Positives = 43/104 (41%)
Frame = +2
Query: 5 PPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNYS 184
PP G PG PP G PG PP PG P PG P GT G S
Sbjct: 86 PPGGYPGQA-PPGGYPGQA-PPGTYPGPTAP--AYPGPTAP--GTQPGQPSGPGAYPPPG 139
Query: 185 NPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGYNPGVPPGSYP 316
PS PG YP A P G+ P G +T P Y+ +P G P
Sbjct: 140 QPSAPG-AYPAAGPFGI--PAGPLTVP------YDLPLPGGVKP 174
>sp|P97384|ANX11_MOUSE Annexin A11 (Annexin XI) (Calcyclin-associated annexin 50) (CAP-50)
Length = 503
Score = 55.1 bits (131), Expect = 7e-08
Identities = 46/120 (38%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Frame = +2
Query: 2 YPPAGQPGMVYPPA-----GQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQ 166
YP G PG YPP GQP P P GM PP G P PS + GA GQ
Sbjct: 73 YP--GAPGGGYPPVPPGGFGQPPPAQQPVPPYGMYPPPGGNPPPGMPSYPAYPGAPVPGQ 130
Query: 167 PGMNYSNPSQPGMVYPNAPPGGMTY-------PQGGMTYPSGP----STGYNPGVPPGSY 313
P M + PG YP PP MTY P G PS P S+ P VPP +
Sbjct: 131 P-MPPTGQQPPG-AYPGQPP--MTYPGQSPMPPPGQQPVPSYPGYSGSSTITPAVPPAQF 186
Score = 48.9 bits (115), Expect = 5e-06
Identities = 48/142 (33%), Positives = 52/142 (36%), Gaps = 37/142 (26%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIYPPAIPP---GMVCPPAGQ------PGMVYPSSGTHGGAY 154
YPPA G + AG P PP++PP V AGQ GM SGT GGA
Sbjct: 13 YPPAAPGGGPWGGAGYP----PPSMPPIGLDNVANYAGQFNQDYLSGMAANMSGTFGGA- 67
Query: 155 SAGQPGMNYSNPSQPGMVYPNAPPGG---------------MTYPQGGMTYPSGPSTGYN 289
M P PG YP PPGG M P GG P PS
Sbjct: 68 -----NMPNLYPGAPGGGYPPVPPGGFGQPPPAQQPVPPYGMYPPPGGNPPPGMPSYPAY 122
Query: 290 PGV-------------PPGSYP 316
PG PPG+YP
Sbjct: 123 PGAPVPGQPMPPTGQQPPGAYP 144
Score = 47.4 bits (111), Expect = 1e-05
Identities = 48/126 (38%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Frame = +2
Query: 2 YPPAGQPGMVYPPAGQPGMIY------PPAIPP---GMVCPPAGQ------PGMVYPSSG 136
YPP P YPPA G + PP++PP V AGQ GM SG
Sbjct: 6 YPP---PAGGYPPAAPGGGPWGGAGYPPPSMPPIGLDNVANYAGQFNQDYLSGMAANMSG 62
Query: 137 THGGAYSAGQPGMNYSNPSQPGMVYPNAPPGGMTYP----QGGMTYPSGPSTGYNPGVPP 304
T GGA M P PG YP PPGG P Q Y P G NP PP
Sbjct: 63 TFGGA------NMPNLYPGAPGGGYPPVPPGGFGQPPPAQQPVPPYGMYPPPGGNP--PP 114
Query: 305 G--SYP 316
G SYP
Sbjct: 115 GMPSYP 120
>sp|Q8R4X3|RBM12_MOUSE RNA-binding protein 12 (RNA-binding motif protein 12) (SH3/WW
domain anchor protein in the nucleus) (SWAN)
Length = 1002
Score = 53.9 bits (128), Expect = 2e-07
Identities = 36/105 (34%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
Frame = +2
Query: 5 PPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNYS 184
P AG P P AG PG P A PG P +G PG P G G AG PG
Sbjct: 653 PSAGMPAAGIPTAGIPGAGLPSAGMPGAGMPSSGMPGPGMPGPGIPG----AGIPGPAMP 708
Query: 185 NPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGY-NPGVPPGSYP 316
P+ PG P G P M P+ P P +P + P
Sbjct: 709 GPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAIPGPAIP 753
Score = 52.8 bits (125), Expect = 3e-07
Identities = 37/104 (35%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +2
Query: 14 GQPGM-VYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHG-GAYSAGQPGMNYSN 187
G P + V P AG P P A PG P AG PG PSSG G G G PG
Sbjct: 645 GNPAVPVIPSAGMPAAGIPTAGIPGAGLPSAGMPGAGMPSSGMPGPGMPGPGIPGAGIPG 704
Query: 188 PSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGY-NPGVPPGSYP 316
P+ PG P G P M P+ P P +P + P
Sbjct: 705 PAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAIP 748
Score = 44.7 bits (104), Expect = 9e-05
Identities = 33/110 (30%), Positives = 39/110 (35%), Gaps = 6/110 (5%)
Frame = +2
Query: 5 PPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSA------GQ 166
P AG PG P AG PG P + PG P G PG P G A
Sbjct: 663 PTAGIPGAGLPSAGMPGAGMPSSGMPGPGMPGPGIPGAGIPGPAMPGPAMPGPAMPGPAM 722
Query: 167 PGMNYSNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGYNPGVPPGSYP 316
PG P+ PG P G P + P+ P P +P + P
Sbjct: 723 PGPAMPGPAMPGPAMPGPAMPGPAIPGPAIPGPAIP----GPAIPGPTIP 768
Score = 35.8 bits (81), Expect = 0.042
Identities = 33/107 (30%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Frame = +2
Query: 5 PPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSG-------THGGAYSAG 163
P PG P PG P PG P PG PS+G T G +
Sbjct: 733 PGPAMPGPAMPGPAIPGPAIPGPAIPGPAIPGPTIPGAGIPSAGGEEHVFLTVGSKEANN 792
Query: 164 QPGMNY-SNPSQPGMVYPNAPPGGMTYPQGGMTYPSGPSTGYNPGVP 301
P N+ N P P PP G+ G + P PS G N G+P
Sbjct: 793 GPPFNFPGNFGGPNAFGPPLPPPGLGGAFGDVR-PVMPSVG-NSGLP 837
Score = 35.0 bits (79), Expect = 0.072
Identities = 22/72 (30%), Positives = 24/72 (33%)
Frame = +2
Query: 5 PPAGQPGMVYPPAGQPGMIYPPAIPPGMVCPPAGQPGMVYPSSGTHGGAYSAGQPGMNYS 184
P PG P PG P PG P PG P G A PG
Sbjct: 708 PGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAIPGPAIPGPAI----PGPAIP 763
Query: 185 NPSQPGMVYPNA 220
P+ PG P+A
Sbjct: 764 GPTIPGAGIPSA 775
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,364,116
Number of Sequences: 369166
Number of extensions: 1456657
Number of successful extensions: 9504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7864
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)