Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_K01
(477 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60432|OXRP_CRIGR 150 kDa oxygen-regulated protein precu... 56 4e-08
sp|Q63617|OXRP_RAT 150 kDa oxygen-regulated protein precurs... 56 5e-08
sp|Q9Y4L1|OXRP_HUMAN 150 kDa oxygen-regulated protein precu... 55 1e-07
sp|Q6GH64|TKT_STAAR Transketolase (TK) 31 1.7
sp|Q9ZD92|LON_RICPR ATP-dependent protease La 30 2.2
sp|Q5HG77|TKT_STAAC Transketolase >gi|54039732|sp|P66963|TK... 30 3.7
sp|Q8L9V6|DOF11_ARATH Dof zinc finger protein DOF1.1 (AtDOF... 29 6.4
sp|Q09608|YRN8_CAEEL Hypothetical protein R07B1.8 in chromo... 29 6.4
sp|Q7WH33|SYL_BORBR Leucyl-tRNA synthetase (Leucine--tRNA l... 28 8.3
sp|Q7W9M4|SYL_BORPA Leucyl-tRNA synthetase (Leucine--tRNA l... 28 8.3
>sp|Q60432|OXRP_CRIGR 150 kDa oxygen-regulated protein precursor (Orp150) (Hypoxia
up-regulated 1) (170 kDa glucose regulated protein)
Length = 999
Score = 56.2 bits (134), Expect = 4e-08
Identities = 34/96 (35%), Positives = 51/96 (53%)
Frame = +3
Query: 48 KGVKAHFGLDTSGLVTLNYIEALFERQWNNNGKNEASTFEKIGNTISNLFGSSPXXXXXX 227
KG+KAHF LD SG+++L+ +E++FE ++ + E ST K+GNTIS+LFG
Sbjct: 537 KGIKAHFNLDESGVLSLDRVESVFETLVEDSPEEE-STLTKLGNTISSLFGG-------- 587
Query: 228 XXXXXSINNDTNIGNDTQVNKTASDSTEPSKNETAE 335
++D V + TE SK+E E
Sbjct: 588 -----GTSSDAKENGTDAVQEEEESPTEGSKDEPGE 618
>sp|Q63617|OXRP_RAT 150 kDa oxygen-regulated protein precursor (Orp150) (Hypoxia
up-regulated 1)
Length = 999
Score = 55.8 bits (133), Expect = 5e-08
Identities = 34/96 (35%), Positives = 51/96 (53%)
Frame = +3
Query: 48 KGVKAHFGLDTSGLVTLNYIEALFERQWNNNGKNEASTFEKIGNTISNLFGSSPXXXXXX 227
KG+KAHF LD SG+++L+ +E++FE ++ + E ST K+GNTIS+LFG
Sbjct: 537 KGIKAHFNLDESGVLSLDRVESVFETLVEDSPEEE-STLTKLGNTISSLFGG-------- 587
Query: 228 XXXXXSINNDTNIGNDTQVNKTASDSTEPSKNETAE 335
++D V + E SK+E AE
Sbjct: 588 -----GTSSDAKENGTDAVQEEEESPAEGSKDEPAE 618
>sp|Q9Y4L1|OXRP_HUMAN 150 kDa oxygen-regulated protein precursor (Orp150) (Hypoxia
up-regulated 1)
Length = 999
Score = 54.7 bits (130), Expect = 1e-07
Identities = 26/51 (50%), Positives = 39/51 (76%)
Frame = +3
Query: 48 KGVKAHFGLDTSGLVTLNYIEALFERQWNNNGKNEASTFEKIGNTISNLFG 200
KG+KAHF LD SG+++L+ +E++FE ++ + E ST K+GNTIS+LFG
Sbjct: 537 KGIKAHFNLDESGVLSLDRVESVFETLVEDSAEEE-STLTKLGNTISSLFG 586
>sp|Q6GH64|TKT_STAAR Transketolase (TK)
Length = 662
Score = 30.8 bits (68), Expect = 1.7
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = +3
Query: 6 SEYMEPSDKYVTDFKGVKAHFGLDTSGLVTLNYIEALFERQWNNNGKNEA---STFEKIG 176
S++ +KY + + F L SG + NY + L ++ +NG + A + + I
Sbjct: 308 SQWNSLLEKYAETYPELAEEFKLAISGKLPKNYKDELPRFEFGHNGASRADSGTVIQAIS 367
Query: 177 NTISNLFGSSPXXXXXXXXXXXSINNDTNIGNDTQVNK 290
T+ + FG S ++N+ T+ ++T K
Sbjct: 368 KTVPSFFGGS---ADLAGSNKSNVNDATDYSSETPEGK 402
>sp|Q9ZD92|LON_RICPR ATP-dependent protease La
Length = 784
Score = 30.4 bits (67), Expect = 2.2
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 18 EPSDKYVTDFKGVKAHFGLDTSGLVTLNYIEALFERQWN--NNGKNEASTFEKIGN 179
E +K ++FK ++A + VT NY+E L W +N K + + EKI N
Sbjct: 266 EAKEKAESEFKKLRAMNQMSAESGVTRNYLETLLSLPWGKYDNSKIDINQAEKILN 321
>sp|Q5HG77|TKT_STAAC Transketolase
sp|P66963|TKT_STAAW Transketolase (TK)
sp|Q6G9L6|TKT_STAAS Transketolase (TK)
sp|P99161|TKT_STAAN Transketolase (TK)
sp|P66962|TKT_STAAM Transketolase (TK)
Length = 662
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +3
Query: 6 SEYMEPSDKYVTDFKGVKAHFGLDTSGLVTLNYIEALFERQWNNNGKNEA---STFEKIG 176
S++ +KY + + F L SG + NY + L + +NG + A + + I
Sbjct: 308 SQWNSLLEKYAETYPELAEEFKLAISGKLPKNYKDELPRFELGHNGASRADSGTVIQAIS 367
Query: 177 NTISNLFGSSPXXXXXXXXXXXSINNDTNIGNDTQVNK 290
T+ + FG S ++N+ T+ ++T K
Sbjct: 368 KTVPSFFGGS---ADLAGSNKSNVNDATDYSSETPEGK 402
>sp|Q8L9V6|DOF11_ARATH Dof zinc finger protein DOF1.1 (AtDOF1.1) (OBF binding protein 2)
Length = 331
Score = 28.9 bits (63), Expect = 6.4
Identities = 21/95 (22%), Positives = 38/95 (40%)
Frame = +3
Query: 132 NNNGKNEASTFEKIGNTISNLFGSSPXXXXXXXXXXXSINNDTNIGNDTQVNKTASDSTE 311
NNN NE + +G+ SP + ND NIGN+ ++ +++ +
Sbjct: 227 NNNNNNENNLMASVGSL-------SPFALFDPTTGLYAFQNDGNIGNNVGISGSSTSMVD 279
Query: 312 PSKNETAEPQTKIETLHHNLKFSNIFIGFSIPTDE 416
+T P K+E + S G + P ++
Sbjct: 280 SRVYQT--PPVKMEEQPNLANLSRPVSGLTSPGNQ 312
>sp|Q09608|YRN8_CAEEL Hypothetical protein R07B1.8 in chromosome X
Length = 594
Score = 28.9 bits (63), Expect = 6.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 405 PTDEVVEVQEKIIELKAIDDEKPP 476
P + E+QE+++E++ + DE+PP
Sbjct: 538 PEKQGPEIQEEVVEMETVKDEQPP 561
>sp|Q7WH33|SYL_BORBR Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 885
Score = 28.5 bits (62), Expect = 8.3
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 276 TQVNKTASDSTEPSKNETAEPQTKIETLHHNLKFSNIFIGFSIPTDEVVEVQEKIIE 446
++VN + SKN +PQ+ I+TL + +F+ F+ P ++ +E + +E
Sbjct: 630 SEVNYGGVGTMSKSKNNGVDPQSLIDTL--GADTARLFVMFASPPEQTLEWSDSGVE 684
>sp|Q7W9M4|SYL_BORPA Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 885
Score = 28.5 bits (62), Expect = 8.3
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 276 TQVNKTASDSTEPSKNETAEPQTKIETLHHNLKFSNIFIGFSIPTDEVVEVQEKIIE 446
++VN + SKN +PQ+ I+TL + +F+ F+ P ++ +E + +E
Sbjct: 630 SEVNYGGVGTMSKSKNNGVDPQSLIDTL--GADTARLFVMFASPPEQTLEWSDSGVE 684
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,548,585
Number of Sequences: 369166
Number of extensions: 713691
Number of successful extensions: 2214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2209
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)