Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_J23
(716 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35414|APJ_HUMAN Apelin receptor (G-protein coupled rece... 34 0.45
sp|O97666|APJ_MACMU Apelin receptor (G-protein coupled rece... 34 0.45
sp|Q9WV08|APJ_MOUSE Apelin receptor (G-protein coupled rece... 33 0.76
sp|Q27520|C13A1_CAEEL Putative cytochrome P450 CYP13A1 33 0.76
sp|Q9JHG3|APJ_RAT Apelin receptor (G-protein coupled recept... 32 2.2
sp|P28931|V1A_TAV 1A protein [Includes: Helicase; Methyltra... 31 3.8
sp|Q7WHN0|ISPG_BORBR 4-hydroxy-3-methylbut-2-en-1-yl diphos... 30 4.9
sp|Q7VWL0|ISPG_BORPE 4-hydroxy-3-methylbut-2-en-1-yl diphos... 30 4.9
sp|Q9RXC9|ISPG_DEIRA 4-hydroxy-3-methylbut-2-en-1-yl diphos... 30 4.9
sp|P52170|IMA1_XENLA Importin alpha-1 subunit (Karyopherin ... 30 6.4
>sp|P35414|APJ_HUMAN Apelin receptor (G-protein coupled receptor APJ) (Angiotensin
receptor-like 1) (HG11)
Length = 380
Score = 33.9 bits (76), Expect = 0.45
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 11 LCWCACICIPLIWIIGEIGYWAIV*SLFIRNRFCYCTTVS 130
LCW + ++++G + +W LF+ N F YCT +S
Sbjct: 259 LCWMPYHLVKTLYMLGSLLHWPCDFDLFLMNIFPYCTCIS 298
>sp|O97666|APJ_MACMU Apelin receptor (G-protein coupled receptor APJ) (Angiotensin
receptor-like 1)
Length = 380
Score = 33.9 bits (76), Expect = 0.45
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 11 LCWCACICIPLIWIIGEIGYWAIV*SLFIRNRFCYCTTVS 130
LCW + ++++G + +W LF+ N F YCT +S
Sbjct: 259 LCWMPYHLVKTLYMLGSLLHWPCDFDLFLMNVFPYCTCIS 298
>sp|Q9WV08|APJ_MOUSE Apelin receptor (G-protein coupled receptor APJ) (Angiotensin
receptor-like 1) (MSR)
Length = 377
Score = 33.1 bits (74), Expect = 0.76
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 11 LCWCACICIPLIWIIGEIGYWAIV*SLFIRNRFCYCTTVS 130
LCW + ++++G + +W +F+ N F YCT +S
Sbjct: 257 LCWMPYHLVKTLYMLGSLLHWPCDFDIFLMNVFPYCTCIS 296
>sp|Q27520|C13A1_CAEEL Putative cytochrome P450 CYP13A1
Length = 519
Score = 33.1 bits (74), Expect = 0.76
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Frame = +3
Query: 198 LYSGVQTTDSFNTNSISSNKLNDFIESCL--REENILHFGEFCNDFSKICAVQLAD-KVN 368
+++ ++ + N I + DFI+ L + E++ HFGE DFSK
Sbjct: 255 IHNRIKQREEDQKNGIEIGEPADFIDLFLDAKAEDVEHFGENNGDFSKSTTYTNRQLTTE 314
Query: 369 DIIMRCLVYFKSEYPELAAS---SVFLIGC---LMENLQEKQKASLQKGQICVELIQLLR 530
+I+ +C V+ + + A S + +L+ + + LQE+ ++ ++ + L+
Sbjct: 315 EIVGQCTVFLIAGFDTTALSLSYATYLLATHPEIQKKLQEEVNRECPNPEVTIDQLSKLK 374
Query: 531 Y 533
Y
Sbjct: 375 Y 375
>sp|Q9JHG3|APJ_RAT Apelin receptor (G-protein coupled receptor APJ) (Angiotensin
receptor-like 1) (B78) (GPCR34)
Length = 377
Score = 31.6 bits (70), Expect = 2.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 11 LCWCACICIPLIWIIGEIGYWAIV*SLFIRNRFCYCTTVS 130
LCW + ++++G + +W F+ N F YCT +S
Sbjct: 257 LCWMPYHLVKTLYMLGNLLHWPCDFDSFLMNVFPYCTCIS 296
>sp|P28931|V1A_TAV 1A protein [Includes: Helicase; Methyltransferase]
Length = 993
Score = 30.8 bits (68), Expect = 3.8
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +3
Query: 141 DPSTDVIRAC--KVALKQIMPLY----SGVQTTDSFNTNSISSNKLNDFIESCLREENIL 302
+P+TDVI K AL L+ S TT +SI N N+ + E +L
Sbjct: 729 NPATDVIVTANKKSALDVRQALFNCTDSKEATTFVRTADSILMNDTNEVQRVLVDEVVLL 788
Query: 303 HFGEFCNDFSKICAVQ 350
HFG+ C SK+ AV+
Sbjct: 789 HFGQLCAVMSKLKAVR 804
>sp|Q7WHN0|ISPG_BORBR 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
(1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
synthase)
sp|Q7W6P6|ISPG_BORPA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
(1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
synthase)
Length = 433
Score = 30.4 bits (67), Expect = 4.9
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +3
Query: 318 CNDFSKICAVQLADKVNDIIMRCLVYFKSEYPELAASSVFLIGCLMENLQEKQKASL 488
C S +LAD + + R + +++ YP + + +V ++GC++ E + A +
Sbjct: 323 CGRTSSTFFQELADSIQSFLRRQMPLWRTRYPGVESMNVAVMGCVVNGPGESRHADI 379
>sp|Q7VWL0|ISPG_BORPE 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
(1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
synthase)
Length = 431
Score = 30.4 bits (67), Expect = 4.9
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +3
Query: 318 CNDFSKICAVQLADKVNDIIMRCLVYFKSEYPELAASSVFLIGCLMENLQEKQKASL 488
C S +LAD + + R + +++ YP + + +V ++GC++ E + A +
Sbjct: 323 CGRTSSTFFQELADSIQSFLRRQMPLWRTRYPGVESMNVAVMGCVVNGPGESRHADI 379
>sp|Q9RXC9|ISPG_DEIRA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
(1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
synthase)
Length = 429
Score = 30.4 bits (67), Expect = 4.9
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 351 LADKVNDIIMRCLVYFKSEYPELAASSVFLIGCLMENLQEKQKASL 488
LA K+ D I + +K++YP + V ++GC++ E + A++
Sbjct: 331 LAQKIQDFIRESMPEWKAKYPGVEDMQVAVMGCVVNGPGESKHANI 376
>sp|P52170|IMA1_XENLA Importin alpha-1 subunit (Karyopherin alpha-1 subunit)
Length = 522
Score = 30.0 bits (66), Expect = 6.4
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +3
Query: 372 IIMRCLVYFKSEYPELAASSVFLIGCLMENLQEKQKASLQKGQICVELIQLLRYKNPKVR 551
I+ R + S + S+ +G ++ ++ +A++ G + V L QLLR++ P ++
Sbjct: 287 IVDRLIQLMYSPELSIVTPSLRTVGNIVTGTDKQTQAAIDAGVLSV-LPQLLRHQKPSIQ 345
Query: 552 ARAAEAIS 575
AA AIS
Sbjct: 346 KEAAWAIS 353
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,397,573
Number of Sequences: 369166
Number of extensions: 1178336
Number of successful extensions: 3083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3082
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)