Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_J16
(109 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6PER3|MARE3_MOUSE Microtubule-associated protein RP/EB ... 48 8e-06
sp|Q9UPY8|MARE3_HUMAN Microtubule-associated protein RP/EB ... 48 8e-06
sp|Q6P848|MARE1_XENTR Microtubule-associated protein RP/EB ... 48 8e-06
sp|Q15691|MARE1_HUMAN Microtubule-associated protein RP/EB ... 47 1e-05
sp|Q66HR2|MARE1_RAT Microtubule-associated protein RP/EB fa... 47 1e-05
sp|Q5ZLC7|MARE1_CHICK Microtubule-associated protein RP/EB ... 47 1e-05
sp|Q66T82|MARE1_COTJA Microtubule-associated protein RP/EB ... 47 1e-05
sp|Q61166|MARE1_MOUSE Microtubule-associated protein RP/EB ... 47 1e-05
sp|Q3ZBD9|MARE1_BOVIN Microtubule-associated protein RP/EB ... 47 1e-05
sp|Q5R7Z5|MARE1_PONPY Microtubule-associated protein RP/EB ... 47 1e-05
>sp|Q6PER3|MARE3_MOUSE Microtubule-associated protein RP/EB family member 3 (End-binding
protein 3) (EB3) (EB1 protein family member 3) (EBF3)
(RP3)
sp|Q5XIT1|MARE3_RAT Microtubule-associated protein RP/EB family member 3 (End-binding
protein 3) (EB3) (EB1 protein family member 3) (EBF3)
(RP3)
Length = 281
Score = 47.8 bits (112), Expect = 8e-06
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3
Query: 6 LQFKKIKFNTNLKHEYISNFRVLQSLFKKHGVDK 107
+ +K+KF L+HEYI NF+VLQ+ FKK GVDK
Sbjct: 56 VHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDK 89
>sp|Q9UPY8|MARE3_HUMAN Microtubule-associated protein RP/EB family member 3 (End-binding
protein 3) (EB3) (EB1 protein family member 3) (EBF3)
(RP3)
Length = 281
Score = 47.8 bits (112), Expect = 8e-06
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3
Query: 6 LQFKKIKFNTNLKHEYISNFRVLQSLFKKHGVDK 107
+ +K+KF L+HEYI NF+VLQ+ FKK GVDK
Sbjct: 56 VHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDK 89
>sp|Q6P848|MARE1_XENTR Microtubule-associated protein RP/EB family member 1
Length = 269
Score = 47.8 bits (112), Expect = 8e-06
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = +3
Query: 15 KKIKFNTNLKHEYISNFRVLQSLFKKHGVDK 107
KK+KF L+HEYI NF+VLQ+ FKK GVDK
Sbjct: 59 KKVKFQAKLEHEYIQNFKVLQAGFKKMGVDK 89
>sp|Q15691|MARE1_HUMAN Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 47.0 bits (110), Expect = 1e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +3
Query: 3 TLQFKKIKFNTNLKHEYISNFRVLQSLFKKHGVDK 107
++ KK+KF L+HEYI NF++LQ+ FK+ GVDK
Sbjct: 55 SIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89
>sp|Q66HR2|MARE1_RAT Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 47.0 bits (110), Expect = 1e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +3
Query: 3 TLQFKKIKFNTNLKHEYISNFRVLQSLFKKHGVDK 107
++ KK+KF L+HEYI NF++LQ+ FK+ GVDK
Sbjct: 55 SIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89
>sp|Q5ZLC7|MARE1_CHICK Microtubule-associated protein RP/EB family member 1
Length = 258
Score = 47.0 bits (110), Expect = 1e-05
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +3
Query: 3 TLQFKKIKFNTNLKHEYISNFRVLQSLFKKHGVDK 107
++ KK+KF L+HEYI NF+VLQ+ FK+ GVDK
Sbjct: 55 SVALKKVKFQAKLEHEYIQNFKVLQAGFKRMGVDK 89
>sp|Q66T82|MARE1_COTJA Microtubule-associated protein RP/EB family member 1
Length = 263
Score = 47.0 bits (110), Expect = 1e-05
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +3
Query: 3 TLQFKKIKFNTNLKHEYISNFRVLQSLFKKHGVDK 107
++ KK+KF L+HEYI NF+VLQ+ FK+ GVDK
Sbjct: 55 SVALKKVKFQAKLEHEYIQNFKVLQAGFKRMGVDK 89
>sp|Q61166|MARE1_MOUSE Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 47.0 bits (110), Expect = 1e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +3
Query: 3 TLQFKKIKFNTNLKHEYISNFRVLQSLFKKHGVDK 107
++ KK+KF L+HEYI NF++LQ+ FK+ GVDK
Sbjct: 55 SIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89
>sp|Q3ZBD9|MARE1_BOVIN Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 47.0 bits (110), Expect = 1e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +3
Query: 3 TLQFKKIKFNTNLKHEYISNFRVLQSLFKKHGVDK 107
++ KK+KF L+HEYI NF++LQ+ FK+ GVDK
Sbjct: 55 SIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89
>sp|Q5R7Z5|MARE1_PONPY Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 47.0 bits (110), Expect = 1e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +3
Query: 3 TLQFKKIKFNTNLKHEYISNFRVLQSLFKKHGVDK 107
++ KK+KF L+HEYI NF++LQ+ FK+ GVDK
Sbjct: 55 SIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,941,571
Number of Sequences: 369166
Number of extensions: 67277
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 68,354,980
effective HSP length: 9
effective length of database: 66,692,365
effective search space used: 1734001490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)