Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_J10
(524 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 246 2e-65
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 245 5e-65
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 244 7e-65
sp|P06604|TBA2_DROME Tubulin alpha-2 chain 244 7e-65
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 244 7e-65
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 244 9e-65
sp|Q91060|TBA_NOTVI Tubulin alpha chain 244 9e-65
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 244 1e-64
sp|P08537|TBA_XENLA Tubulin alpha chain 244 1e-64
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 244 1e-64
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 246 bits (628), Expect = 2e-65
Identities = 116/174 (66%), Positives = 145/174 (83%)
Frame = +3
Query: 3 GIQNNGIQLQEKREETGDSKTFSTFFNECGNYRFVPRSVFIDLEPTVLDEIRTGSYRQLY 182
GIQ +G +K TGD +F+TFF+E G+ + VPR+V++DLEPTV+DE+RTG+YRQL+
Sbjct: 29 GIQPDGQMPSDKTIGTGDD-SFNTFFSETGSGKHVPRAVYVDLEPTVVDEVRTGTYRQLF 87
Query: 183 HPELLISGKEDAANNYARGHYTVGKELIDHTVDQIRKLSEQCTGLQGFLVFHXXXXXXXX 362
HPE LI+GKEDAANNYARGHYT+GKE++D +D+IRKL++QCTGLQGFL+FH
Sbjct: 88 HPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGS 147
Query: 363 XXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVVEPYNSILTTHTTLEHTDCA 524
LLMERLS+DYGKKSKLEFA+YP+P ++TAVVEPYNSILTTHTTLEH+DCA
Sbjct: 148 GFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCA 201
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 245 bits (625), Expect = 5e-65
Identities = 119/174 (68%), Positives = 143/174 (82%)
Frame = +3
Query: 3 GIQNNGIQLQEKREETGDSKTFSTFFNECGNYRFVPRSVFIDLEPTVLDEIRTGSYRQLY 182
GIQ +G +K GD +F+TFF+E G + VPR+VF+DLEPTV+DE+RTG+YRQL+
Sbjct: 29 GIQPDGQMPSDKTIGGGDD-SFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLF 87
Query: 183 HPELLISGKEDAANNYARGHYTVGKELIDHTVDQIRKLSEQCTGLQGFLVFHXXXXXXXX 362
HPE LI+GKEDAANNYARGHYTVGKELID +D+IRKL++QCTGLQGFL+FH
Sbjct: 88 HPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGS 147
Query: 363 XXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVVEPYNSILTTHTTLEHTDCA 524
LLMERLS+DYGKKSKLEFA+YP+P ++TAVVEPYNSILTTHTTLEH+DCA
Sbjct: 148 GFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCA 201
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 244 bits (624), Expect = 7e-65
Identities = 117/174 (67%), Positives = 143/174 (82%)
Frame = +3
Query: 3 GIQNNGIQLQEKREETGDSKTFSTFFNECGNYRFVPRSVFIDLEPTVLDEIRTGSYRQLY 182
GIQ +G +K GD +F+TFF+E G + VPR+VF+DLEPTV+DE+RTG+YRQL+
Sbjct: 29 GIQPDGQMPSDKTIGGGDD-SFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLF 87
Query: 183 HPELLISGKEDAANNYARGHYTVGKELIDHTVDQIRKLSEQCTGLQGFLVFHXXXXXXXX 362
HPE LI+GKEDAANNYARGHYT+GKE++D +D++RKLS+QCTGLQGFL+FH
Sbjct: 88 HPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGS 147
Query: 363 XXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVVEPYNSILTTHTTLEHTDCA 524
LLMERLS+DYGKKSKLEFAIYP+P ++TAVVEPYNSILTTHTTLEH+DCA
Sbjct: 148 GFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA 201
>sp|P06604|TBA2_DROME Tubulin alpha-2 chain
Length = 449
Score = 244 bits (624), Expect = 7e-65
Identities = 118/174 (67%), Positives = 143/174 (82%)
Frame = +3
Query: 3 GIQNNGIQLQEKREETGDSKTFSTFFNECGNYRFVPRSVFIDLEPTVLDEIRTGSYRQLY 182
GIQ +G +K GD +FSTFF+E G + VPR+VF+DLEPTV+DE+RTG+YRQL+
Sbjct: 29 GIQPDGHMPSDKTVGGGDD-SFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLF 87
Query: 183 HPELLISGKEDAANNYARGHYTVGKELIDHTVDQIRKLSEQCTGLQGFLVFHXXXXXXXX 362
HPE LI+GKEDAANNYARGHYT+GKE++D +D+IRKL++QCTGLQGFLVFH
Sbjct: 88 HPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHSFGGGTGS 147
Query: 363 XXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVVEPYNSILTTHTTLEHTDCA 524
LLMERLS+DYGKKSKLEF+IYP+P ++TAVVEPYNSILTTHTTLEH+DCA
Sbjct: 148 GFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA 201
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 244 bits (624), Expect = 7e-65
Identities = 119/174 (68%), Positives = 143/174 (82%)
Frame = +3
Query: 3 GIQNNGIQLQEKREETGDSKTFSTFFNECGNYRFVPRSVFIDLEPTVLDEIRTGSYRQLY 182
GIQ +G +K GD +F+TFF+E G + VPR+VF+DLEPTV+DE+RTG+YRQL+
Sbjct: 29 GIQPDGQMPSDKTIGGGDD-SFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLF 87
Query: 183 HPELLISGKEDAANNYARGHYTVGKELIDHTVDQIRKLSEQCTGLQGFLVFHXXXXXXXX 362
HPE LI+GKEDAANNYARGHYTVGKE+ID +D+IRKL++QCTGLQGFL+FH
Sbjct: 88 HPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGS 147
Query: 363 XXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVVEPYNSILTTHTTLEHTDCA 524
LLMERLS+DYGKKSKLEFAIYP+P ++TAVVEPYNSILTTHTTLEH+DCA
Sbjct: 148 GFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCA 201
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 244 bits (623), Expect = 9e-65
Identities = 117/174 (67%), Positives = 143/174 (82%)
Frame = +3
Query: 3 GIQNNGIQLQEKREETGDSKTFSTFFNECGNYRFVPRSVFIDLEPTVLDEIRTGSYRQLY 182
GIQ +G +K GD +F+TFF+E G + VPR+VF+DLEPTV+DE+RTG+YRQL+
Sbjct: 29 GIQPDGQMPSDKTVGGGDD-SFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLF 87
Query: 183 HPELLISGKEDAANNYARGHYTVGKELIDHTVDQIRKLSEQCTGLQGFLVFHXXXXXXXX 362
HPE LI+GKEDAANNYARGHYT+GKE++D +D+IRKL++QCTGLQGFL+FH
Sbjct: 88 HPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGS 147
Query: 363 XXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVVEPYNSILTTHTTLEHTDCA 524
LLMERLS+DYGKKSKLEFAIYP+P ++TAVVEPYNSILTTHTTLEH+DCA
Sbjct: 148 GFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA 201
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 244 bits (623), Expect = 9e-65
Identities = 117/174 (67%), Positives = 143/174 (82%)
Frame = +3
Query: 3 GIQNNGIQLQEKREETGDSKTFSTFFNECGNYRFVPRSVFIDLEPTVLDEIRTGSYRQLY 182
GIQ +G +K GD +F+TFF+E G + VPR++F+DLEP+V+DE+RTG+YRQL+
Sbjct: 29 GIQPDGQMPSDKTIGGGDD-SFNTFFSETGAGKHVPRAIFVDLEPSVIDEVRTGTYRQLF 87
Query: 183 HPELLISGKEDAANNYARGHYTVGKELIDHTVDQIRKLSEQCTGLQGFLVFHXXXXXXXX 362
HPE LISGKEDAANNYARGHYT+GKE+ID +D++RKL++QCTGLQGFLVFH
Sbjct: 88 HPEQLISGKEDAANNYARGHYTIGKEIIDQVLDRMRKLADQCTGLQGFLVFHSFGGGTGS 147
Query: 363 XXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVVEPYNSILTTHTTLEHTDCA 524
LLMERLS+DYGKKSKLEFAIYP+P ++TAVVEPYNSILTTHTTLEH+DCA
Sbjct: 148 GFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA 201
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 244 bits (622), Expect = 1e-64
Identities = 118/174 (67%), Positives = 143/174 (82%)
Frame = +3
Query: 3 GIQNNGIQLQEKREETGDSKTFSTFFNECGNYRFVPRSVFIDLEPTVLDEIRTGSYRQLY 182
GIQ +G +K GD +F+TFF+E G + VPR+VF+DLEPTV+DE+RTG+YRQL+
Sbjct: 29 GIQPDGQMPSDKTIGGGDD-SFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLF 87
Query: 183 HPELLISGKEDAANNYARGHYTVGKELIDHTVDQIRKLSEQCTGLQGFLVFHXXXXXXXX 362
HPE LI+GKEDAANNYARGHYT+GKE+ID +D+IRKL++QCTGLQGFLVFH
Sbjct: 88 HPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGS 147
Query: 363 XXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVVEPYNSILTTHTTLEHTDCA 524
LLMERLS+DYGKKSKLEF+IYP+P ++TAVVEPYNSILTTHTTLEH+DCA
Sbjct: 148 GFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA 201
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 244 bits (622), Expect = 1e-64
Identities = 118/174 (67%), Positives = 143/174 (82%)
Frame = +3
Query: 3 GIQNNGIQLQEKREETGDSKTFSTFFNECGNYRFVPRSVFIDLEPTVLDEIRTGSYRQLY 182
GIQ +G +K GD +F+TFF+E G + VPR+VF+DLEPTV+DE+RTG+YRQL+
Sbjct: 29 GIQPDGQMPSDKTIGGGDD-SFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLF 87
Query: 183 HPELLISGKEDAANNYARGHYTVGKELIDHTVDQIRKLSEQCTGLQGFLVFHXXXXXXXX 362
HPE LI+GKEDAANNYARGHYT+GKE+ID +D+IRKL++QCTGLQGFLVFH
Sbjct: 88 HPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGS 147
Query: 363 XXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVVEPYNSILTTHTTLEHTDCA 524
LL+ERLS+DYGKKSKLEFAIYP+P ++TAVVEPYNSILTTHTTLEH+DCA
Sbjct: 148 GFTSLLLERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA 201
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 244 bits (622), Expect = 1e-64
Identities = 118/174 (67%), Positives = 143/174 (82%)
Frame = +3
Query: 3 GIQNNGIQLQEKREETGDSKTFSTFFNECGNYRFVPRSVFIDLEPTVLDEIRTGSYRQLY 182
GIQ +G +K GD +F+TFF+E G + VPR+VF+DLEPTV+DE+RTG+YRQL+
Sbjct: 29 GIQPDGQMPSDKTIGGGDD-SFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLF 87
Query: 183 HPELLISGKEDAANNYARGHYTVGKELIDHTVDQIRKLSEQCTGLQGFLVFHXXXXXXXX 362
HPE LI+GKEDAANNYARGHYT+GKE+ID +D+IRKL++QCTGLQGFLVFH
Sbjct: 88 HPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGS 147
Query: 363 XXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVVEPYNSILTTHTTLEHTDCA 524
LLMERLS+DYGKKSKLEF+IYP+P ++TAVVEPYNSILTTHTTLEH+DCA
Sbjct: 148 GFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA 201
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,897,255
Number of Sequences: 369166
Number of extensions: 1052379
Number of successful extensions: 2740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2664
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)